Wall clock time and date at job start Mon Mar 30 2020 02:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86797 * 119.99780 * 2 1 4 4 H 1.48502 * 109.47208 * 275.14844 * 3 2 1 5 5 H 1.48501 * 109.47352 * 35.15087 * 3 2 1 6 6 H 1.48498 * 109.47279 * 155.15309 * 3 2 1 7 7 C 1.39937 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00226 * 30.40576 * 7 2 1 9 9 C 1.41283 * 119.99821 * 210.40985 * 7 2 1 10 10 C 1.40982 * 120.64482 * 214.31723 * 9 7 2 11 11 C 1.38447 * 118.18878 * 180.02562 * 10 9 7 12 12 O 1.35953 * 120.30660 * 179.97438 * 11 10 9 13 13 C 1.39131 * 119.38856 * 359.97438 * 11 10 9 14 14 N 1.32040 * 121.28110 * 0.02562 * 13 11 10 15 15 C 1.31715 * 121.98927 * 359.97438 * 14 13 11 16 16 F 1.35103 * 119.77596 * 180.02562 * 15 14 13 17 17 H 0.96996 * 120.00407 * 0.02562 * 1 2 3 18 18 H 1.08003 * 120.90969 * 0.04108 * 10 9 7 19 19 H 0.96697 * 114.00287 * 270.01895 * 12 11 10 20 20 H 1.08001 * 119.36304 * 179.72318 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3811 2.1093 -1.3944 5 1 1.4985 2.6188 0.8061 6 1 3.5901 1.4113 0.5883 7 6 2.0081 -1.2119 0.0005 8 1 1.5796 -2.0831 -0.4724 9 6 3.2752 -1.2957 0.6199 10 6 4.2791 -2.1330 0.0920 11 6 5.5018 -2.1766 0.7400 12 8 6.5003 -2.9697 0.2683 13 6 5.6994 -1.4014 1.8783 14 7 4.7430 -0.6248 2.3533 15 6 3.5605 -0.5432 1.7788 16 9 2.6145 0.2666 2.3028 17 1 -0.4850 0.8400 -0.0004 18 1 4.0994 -2.7241 -0.7938 19 1 6.4985 -3.8644 0.6351 20 1 6.6519 -1.4391 2.3860 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238665329.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:00 Heat of formation + Delta-G solvation = -58.406930 kcal Electronic energy + Delta-G solvation = -10774.063571 eV Core-core repulsion = 8464.592585 eV Total energy + Delta-G solvation = -2309.470985 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.044 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.77606 -38.87786 -36.26374 -34.07053 -31.49881 -28.86193 -25.80307 -22.15924 -21.62985 -18.48927 -17.23382 -16.74878 -15.84241 -15.52496 -14.74054 -14.17840 -13.19283 -12.92984 -12.88031 -11.96816 -11.80207 -11.68629 -11.37261 -10.78692 -10.48879 -10.01225 -9.46603 -8.62292 -8.40323 -7.64703 -7.25754 -4.75500 2.05385 2.34995 3.07404 3.13435 3.21491 3.88528 4.22418 4.76384 5.04608 5.09033 5.90374 6.00456 6.36724 6.66332 6.94039 7.13639 7.15476 7.54128 7.95371 8.12238 8.29905 8.44665 8.97588 9.71729 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.057657 B = 0.017360 C = 0.015576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.509887 B = 1612.491715 C = 1797.211871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.092 3.908 3 Si 0.922 3.078 4 H -0.284 1.284 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.438 4.438 8 H 0.103 0.897 9 C 0.040 3.960 10 C -0.198 4.198 11 C 0.081 3.919 12 O -0.504 6.504 13 C -0.038 4.038 14 N -0.470 5.470 15 C 0.174 3.826 16 F -0.126 7.126 17 H 0.292 0.708 18 H 0.124 0.876 19 H 0.379 0.621 20 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 -1.557 0.059 4.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.133 4.133 3 Si 0.747 3.253 4 H -0.211 1.211 5 H -0.196 1.196 6 H -0.173 1.173 7 C -0.464 4.464 8 H 0.120 0.880 9 C 0.034 3.966 10 C -0.224 4.224 11 C 0.035 3.965 12 O -0.312 6.312 13 C -0.194 4.194 14 N -0.184 5.184 15 C 0.014 3.986 16 F -0.106 7.106 17 H 0.103 0.897 18 H 0.142 0.858 19 H 0.233 0.767 20 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.342 -0.478 0.464 4.393 hybrid contribution -0.267 -0.078 -0.396 0.484 sum 4.075 -0.556 0.068 4.113 Atomic orbital electron populations 1.69761 1.08577 1.31362 1.28958 1.26318 0.94701 1.02472 0.89831 0.86114 0.82545 0.79050 0.77585 1.21108 1.19646 1.17320 1.19328 0.98028 0.98279 1.30796 0.87958 1.18162 0.94139 0.92862 0.91431 1.21488 0.91236 1.07516 1.02129 1.19257 0.87657 0.95168 0.94377 1.84755 1.50517 1.26470 1.69452 1.21688 0.97809 1.02173 0.97748 1.66284 1.00320 1.18880 1.32958 1.18183 0.86054 1.00350 0.93963 1.91135 1.61852 1.71075 1.86562 0.89681 0.85839 0.76654 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.61 13.93 55.55 0.77 -18.84 14 2 C 0.09 2.37 4.71 -17.34 -0.08 2.29 14 3 Si 0.92 21.52 25.32 -169.99 -4.30 17.22 14 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 14 5 H -0.27 -6.09 7.11 56.52 0.40 -5.69 14 6 H -0.25 -6.24 5.49 56.52 0.31 -5.93 14 7 C -0.44 -11.50 9.41 -37.79 -0.36 -11.85 14 8 H 0.10 2.70 8.06 -52.49 -0.42 2.28 14 9 C 0.04 1.03 4.89 -106.62 -0.52 0.51 14 10 C -0.20 -4.52 9.88 -38.47 -0.38 -4.90 14 11 C 0.08 1.72 6.72 -39.17 -0.26 1.46 14 12 O -0.50 -8.81 13.52 -19.59 -0.26 -9.07 14 13 C -0.04 -0.84 11.13 -17.13 -0.19 -1.03 14 14 N -0.47 -11.76 10.34 -12.73 -0.13 -11.89 14 15 C 0.17 4.54 6.23 -16.52 -0.10 4.44 14 16 F -0.13 -3.34 12.85 2.25 0.03 -3.31 14 17 H 0.29 6.73 8.30 -40.82 -0.34 6.39 14 18 H 0.12 2.58 8.06 -52.48 -0.42 2.16 14 19 H 0.38 4.54 9.06 45.56 0.41 4.95 14 20 H 0.14 2.60 8.06 -52.49 -0.42 2.18 14 LS Contribution 190.16 15.07 2.87 2.87 Total: -1.00 -28.69 190.16 -3.01 -31.70 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -0.08 Total: 0.40 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.90 Total: -9.08 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.64 Total: -30.73 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.26 Total: -9.07 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.03 Total: -3.31 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.30 Total: 17.22 kcal Total LS contribution 2.87 Total: 2.87 kcal Total: -28.69 -3.01 -31.70 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238665329.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.706 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds