Wall clock time and date at job start Mon Mar 30 2020 02:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00192 * 2 1 4 4 H 1.48501 * 109.46978 * 240.00059 * 3 2 1 5 5 H 1.48504 * 109.46935 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47442 * 119.99766 * 3 2 1 7 7 C 1.37884 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99809 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46841 * 179.97438 * 9 7 2 11 11 C 1.35752 * 116.99829 * 180.02562 * 10 9 7 12 12 C 1.35868 * 126.13407 * 180.02562 * 11 10 9 13 13 C 1.40360 * 107.78445 * 180.02562 * 12 11 10 14 14 N 1.39964 * 125.93422 * 180.25990 * 13 12 11 15 15 N 1.31234 * 108.13094 * 0.02562 * 13 12 11 16 16 N 1.35157 * 126.13547 * 0.02562 * 11 10 9 17 17 H 0.97006 * 125.97862 * 359.97438 * 16 11 10 18 18 H 0.96997 * 119.99949 * 0.02562 * 1 2 3 19 19 H 1.09003 * 109.47119 * 60.00111 * 9 7 2 20 20 H 1.08998 * 109.47466 * 299.99499 * 9 7 2 21 21 H 1.08001 * 126.10452 * 0.05904 * 12 11 10 22 22 H 0.96996 * 120.00185 * 179.71722 * 14 13 12 23 23 H 0.97004 * 119.99945 * 359.72404 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5854 0.0005 11 6 1.6608 -4.8398 0.0000 12 6 2.3685 -5.9996 0.0004 13 6 1.4510 -7.0617 -0.0010 14 7 1.7716 -8.4241 0.0040 15 7 0.2402 -6.5555 -0.0028 16 7 0.3475 -5.1590 -0.0010 17 1 -0.3917 -4.5309 -0.0012 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6241 -2.5568 0.8903 21 1 3.4449 -6.0883 0.0021 22 1 1.0651 -9.0887 0.0067 23 1 2.7005 -8.7038 0.0049 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238706097.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:19 Heat of formation + Delta-G solvation = 30.706713 kcal Electronic energy + Delta-G solvation = -10492.664704 eV Core-core repulsion = 8342.811033 eV Total energy + Delta-G solvation = -2149.853672 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.65761 -37.34127 -33.96081 -33.00834 -29.44947 -28.81240 -27.29451 -23.13665 -20.70617 -20.22050 -18.16803 -16.73765 -16.26066 -15.26734 -15.06345 -14.74171 -13.82200 -13.71198 -13.40864 -12.59988 -11.77309 -11.23263 -11.11991 -10.83161 -10.36393 -10.06565 -10.00862 -9.53288 -8.70002 -7.63884 -7.61440 -6.36149 -4.41049 2.65975 3.21099 3.21270 3.24198 3.27220 3.51946 3.84284 4.23159 4.56463 5.01480 5.65831 6.07454 6.35245 6.47577 6.78208 6.89621 7.22134 7.61275 7.73164 7.80913 7.86036 8.44204 8.52658 8.72239 9.25042 10.75133 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.125890 B = 0.008186 C = 0.007718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 222.362529 B = 3419.590985 C = 3626.808206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.185 3.815 10 O -0.298 6.298 11 C 0.331 3.669 12 C -0.363 4.363 13 C 0.356 3.644 14 N -0.848 5.848 15 N -0.364 5.364 16 N -0.505 5.505 17 H 0.438 0.562 18 H 0.270 0.730 19 H 0.022 0.978 20 H 0.022 0.978 21 H 0.145 0.855 22 H 0.399 0.601 23 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 -9.408 0.011 9.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.745 3.255 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.092 0.908 9 C 0.112 3.888 10 O -0.202 6.202 11 C 0.159 3.841 12 C -0.395 4.395 13 C 0.096 3.904 14 N -0.400 5.400 15 N -0.203 5.203 16 N -0.228 5.228 17 H 0.283 0.717 18 H 0.079 0.921 19 H 0.040 0.960 20 H 0.040 0.960 21 H 0.162 0.838 22 H 0.227 0.773 23 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.379 -9.239 0.009 9.341 hybrid contribution 0.665 1.153 -0.002 1.331 sum 2.045 -8.086 0.007 8.341 Atomic orbital electron populations 1.69923 1.06199 1.28042 1.48994 1.24962 0.95113 0.99728 0.94363 0.86222 0.79232 0.80986 0.79107 1.19730 1.20910 1.19723 1.20857 0.94373 0.88278 1.52983 0.90823 1.20723 0.88871 0.82221 0.96946 1.86351 1.36544 1.10141 1.87207 1.19770 0.83825 0.87680 0.92864 1.19712 0.99581 0.87702 1.32511 1.18792 0.91180 0.85885 0.94545 1.41202 1.10010 1.00997 1.87785 1.77292 1.18111 0.86540 1.38354 1.46249 1.05844 1.05586 1.65146 0.71680 0.92068 0.96017 0.96002 0.83770 0.77328 0.76418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 13.29 55.43 0.74 -24.55 14 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 14 3 Si 0.92 20.86 29.54 -169.99 -5.02 15.84 14 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 14 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 14 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 14 7 C -0.53 -14.73 9.43 -34.44 -0.32 -15.05 14 8 H 0.07 2.03 7.81 -52.48 -0.41 1.62 14 9 C 0.19 4.78 4.98 36.00 0.18 4.96 14 10 O -0.30 -7.16 10.19 -18.97 -0.19 -7.35 14 11 C 0.33 7.04 7.82 -16.94 -0.13 6.91 14 12 C -0.36 -6.83 10.85 -39.63 -0.43 -7.26 14 13 C 0.36 6.17 8.45 -154.59 -1.31 4.86 14 14 N -0.85 -10.18 9.15 31.37 0.29 -9.90 14 15 N -0.36 -6.98 12.71 31.39 0.40 -6.58 14 16 N -0.51 -10.04 7.11 30.35 0.22 -9.82 14 17 H 0.44 8.15 8.30 -182.63 -1.52 6.64 14 18 H 0.27 7.16 8.31 -40.82 -0.34 6.82 14 19 H 0.02 0.58 8.14 -51.93 -0.42 0.15 14 20 H 0.02 0.58 8.14 -51.93 -0.42 0.16 14 21 H 0.14 2.42 8.06 -52.49 -0.42 2.00 14 22 H 0.40 4.05 8.96 -40.82 -0.37 3.68 14 23 H 0.41 3.75 8.96 -40.82 -0.37 3.38 14 LS Contribution 216.98 15.07 3.27 3.27 Total: -1.00 -30.41 216.98 -5.48 -35.89 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -3.06 Total: 7.20 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.11 Total: -4.00 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 1.64 Total: -50.85 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.19 Total: -7.35 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -30.41 -5.48 -35.89 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238706097.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.595 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds