Wall clock time and date at job start Mon Mar 30 2020 02:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00192 * 2 1 4 4 H 1.48501 * 109.46978 * 240.00059 * 3 2 1 5 5 H 1.48504 * 109.46935 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47442 * 119.99766 * 3 2 1 7 7 C 1.37884 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99809 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46841 * 179.97438 * 9 7 2 11 11 C 1.35752 * 116.99829 * 180.02562 * 10 9 7 12 12 C 1.35868 * 126.13407 * 180.02562 * 11 10 9 13 13 C 1.40360 * 107.78445 * 180.02562 * 12 11 10 14 14 N 1.39964 * 125.93422 * 180.25990 * 13 12 11 15 15 N 1.31234 * 108.13094 * 0.02562 * 13 12 11 16 16 N 1.35157 * 126.13547 * 0.02562 * 11 10 9 17 17 H 0.97006 * 125.97862 * 359.97438 * 16 11 10 18 18 H 0.96997 * 119.99949 * 0.02562 * 1 2 3 19 19 H 1.09003 * 109.47119 * 60.00111 * 9 7 2 20 20 H 1.08998 * 109.47466 * 299.99499 * 9 7 2 21 21 H 1.08001 * 126.10452 * 0.05904 * 12 11 10 22 22 H 0.96996 * 120.00185 * 179.71722 * 14 13 12 23 23 H 0.97004 * 119.99945 * 359.72404 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5854 0.0005 11 6 1.6608 -4.8398 0.0000 12 6 2.3685 -5.9996 0.0004 13 6 1.4510 -7.0617 -0.0010 14 7 1.7716 -8.4241 0.0040 15 7 0.2402 -6.5555 -0.0028 16 7 0.3475 -5.1590 -0.0010 17 1 -0.3917 -4.5309 -0.0012 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6241 -2.5568 0.8903 21 1 3.4449 -6.0883 0.0021 22 1 1.0651 -9.0887 0.0067 23 1 2.7005 -8.7038 0.0049 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238706097.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:19 Heat of formation + Delta-G solvation = 6.933615 kcal Electronic energy + Delta-G solvation = -10493.695583 eV Core-core repulsion = 8342.811033 eV Total energy + Delta-G solvation = -2150.884551 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.075 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.19207 -39.10403 -35.30555 -35.00304 -31.09666 -30.29874 -29.18434 -25.14065 -22.30476 -21.62807 -19.85333 -18.74415 -17.56051 -17.02140 -16.80105 -16.24915 -15.44187 -15.29856 -15.08289 -14.32815 -13.63591 -13.05407 -13.01774 -12.46680 -12.23751 -11.65877 -11.62077 -11.46531 -10.75233 -9.23371 -8.92440 -8.44278 -6.58992 1.08606 1.40358 1.44512 1.52940 1.76330 2.07058 2.15906 2.46221 2.91603 3.11068 4.21802 4.40579 4.64470 4.81293 4.95725 5.21280 5.48726 5.67858 5.84881 6.42428 6.56474 6.61934 6.81427 7.13240 7.36178 8.67493 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.125890 B = 0.008186 C = 0.007718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 222.362529 B = 3419.590985 C = 3626.808206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.560 4.560 8 H 0.071 0.929 9 C 0.200 3.800 10 O -0.311 6.311 11 C 0.298 3.702 12 C -0.355 4.355 13 C 0.359 3.641 14 N -0.823 5.823 15 N -0.378 5.378 16 N -0.510 5.510 17 H 0.439 0.561 18 H 0.275 0.725 19 H 0.009 0.991 20 H 0.009 0.991 21 H 0.165 0.835 22 H 0.411 0.589 23 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -9.866 0.013 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.812 3.188 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.597 4.597 8 H 0.089 0.911 9 C 0.127 3.873 10 O -0.217 6.217 11 C 0.126 3.874 12 C -0.387 4.387 13 C 0.098 3.902 14 N -0.378 5.378 15 N -0.218 5.218 16 N -0.232 5.232 17 H 0.284 0.716 18 H 0.084 0.916 19 H 0.027 0.973 20 H 0.027 0.973 21 H 0.182 0.818 22 H 0.242 0.758 23 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 2.301 -9.763 0.011 10.030 hybrid contribution 0.377 1.119 -0.002 1.181 sum 2.678 -8.644 0.008 9.049 Atomic orbital electron populations 1.70019 1.07701 1.29337 1.49054 1.25957 0.96052 1.03395 0.93258 0.85127 0.78037 0.76133 0.79532 1.18875 1.19901 1.18861 1.21217 0.94581 0.89698 1.54220 0.91102 1.20350 0.88653 0.82676 0.95611 1.86277 1.36371 1.10943 1.88092 1.20103 0.84885 0.87145 0.95273 1.20085 1.00758 0.87179 1.30710 1.19030 0.90150 0.87662 0.93379 1.41207 1.11599 0.98922 1.86051 1.77279 1.19157 0.85970 1.39348 1.46296 1.05458 1.06067 1.65376 0.71637 0.91570 0.97307 0.97288 0.81760 0.75837 0.74483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.57 13.29 21.45 0.28 -52.28 14 2 C 0.01 0.74 5.46 84.66 0.46 1.20 14 3 Si 0.99 42.25 29.54 68.60 2.03 44.27 14 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 14 5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 14 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 14 7 C -0.56 -31.72 9.43 25.60 0.24 -31.48 14 8 H 0.07 3.94 7.81 -2.91 -0.02 3.92 14 9 C 0.20 10.67 4.98 71.23 0.36 11.02 14 10 O -0.31 -15.24 10.19 -90.78 -0.93 -16.17 14 11 C 0.30 12.69 7.82 83.63 0.65 13.34 14 12 C -0.36 -12.84 10.85 22.24 0.24 -12.60 14 13 C 0.36 11.70 8.45 133.38 1.13 12.82 14 14 N -0.82 -17.18 9.15 -54.66 -0.50 -17.68 14 15 N -0.38 -14.07 12.71 -54.60 -0.69 -14.77 14 16 N -0.51 -20.42 7.11 -169.21 -1.20 -21.62 14 17 H 0.44 16.87 8.30 -213.34 -1.77 15.10 14 18 H 0.28 14.57 8.31 -92.71 -0.77 13.80 14 19 H 0.01 0.50 8.14 -2.39 -0.02 0.48 14 20 H 0.01 0.51 8.14 -2.39 -0.02 0.49 14 21 H 0.16 5.13 8.06 -2.91 -0.02 5.11 14 22 H 0.41 7.02 8.96 -92.71 -0.83 6.18 14 23 H 0.42 6.27 8.96 -92.71 -0.83 5.44 14 Total: -1.00 -64.13 216.98 -0.10 -64.23 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -2.17 Total: 19.70 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 3.08 Total: -5.69 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -2.11 Total: -106.35 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.93 Total: -16.17 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -64.13 -0.10 -64.23 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238706097.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.161 kcal (2) G-P(sol) polarization free energy of solvation -64.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds