Wall clock time and date at job start Mon Mar 30 2020 02:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86796 * 119.99801 * 2 1 4 4 H 1.48496 * 109.47258 * 240.00125 * 3 2 1 5 5 H 1.48503 * 109.47498 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46845 * 120.00195 * 3 2 1 7 7 C 1.39879 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99725 * 197.51470 * 7 2 1 9 9 C 1.41154 * 120.00094 * 17.52019 * 7 2 1 10 10 C 1.41194 * 120.61379 * 23.75251 * 9 7 2 11 11 C 1.36698 * 118.41621 * 179.97438 * 10 9 7 12 12 C 1.39428 * 119.57715 * 359.97438 * 11 10 9 13 13 O 1.35489 * 119.38225 * 180.27848 * 12 11 10 14 14 N 1.32539 * 121.23625 * 0.02562 * 12 11 10 15 15 C 1.31758 * 121.71669 * 359.97438 * 14 12 11 16 16 F 1.35104 * 119.86098 * 180.02562 * 15 14 12 17 17 H 0.97004 * 120.00301 * 359.97438 * 1 2 3 18 18 H 1.08005 * 120.78967 * 359.97438 * 10 9 7 19 19 H 1.07996 * 120.20618 * 180.02562 * 11 10 9 20 20 H 0.96697 * 113.99967 * 269.72917 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2780 2.7465 0.0006 6 1 3.0968 1.6963 1.2125 7 6 2.0084 -1.2114 -0.0005 8 1 3.0509 -1.2332 0.2809 9 6 1.3517 -2.4053 -0.3691 10 6 0.2040 -2.3705 -1.1907 11 6 -0.3961 -3.5536 -1.5204 12 6 0.1348 -4.7512 -1.0428 13 8 -0.4598 -5.9219 -1.3768 14 7 1.2132 -4.7661 -0.2724 15 6 1.8310 -3.6557 0.0760 16 9 2.9278 -3.7145 0.8626 17 1 -0.4851 0.8401 0.0004 18 1 -0.1904 -1.4315 -1.5500 19 1 -1.2753 -3.5607 -2.1475 20 1 -1.1442 -6.2066 -0.7558 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238715191.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:02 Heat of formation + Delta-G solvation = -64.679576 kcal Electronic energy + Delta-G solvation = -10566.661534 eV Core-core repulsion = 8256.918546 eV Total energy + Delta-G solvation = -2309.742988 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.044 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.37949 -38.69223 -35.96111 -34.02153 -30.92728 -29.40305 -25.34581 -22.06052 -21.64633 -17.90304 -17.59474 -16.29430 -15.71838 -14.93987 -14.48820 -14.13712 -13.59568 -12.70772 -12.38538 -11.81672 -11.77865 -11.33691 -11.18480 -10.80134 -10.48245 -10.20156 -9.55349 -8.56936 -8.38510 -7.63709 -7.09078 -4.66873 2.27100 2.64964 2.91946 2.94188 3.00224 3.70409 4.23450 4.68095 5.24919 5.62170 6.11117 6.42000 6.56384 6.81308 7.07088 7.20720 7.59640 7.62918 8.12467 8.30708 8.38485 8.66815 9.13592 9.80533 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.061877 B = 0.014004 C = 0.011755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.402881 B = 1998.939036 C = 2381.489309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.073 3.927 3 Si 0.922 3.078 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.430 4.430 8 H 0.091 0.909 9 C 0.049 3.951 10 C -0.114 4.114 11 C -0.153 4.153 12 C 0.175 3.825 13 O -0.486 6.486 14 N -0.507 5.507 15 C 0.181 3.819 16 F -0.136 7.136 17 H 0.289 0.711 18 H 0.140 0.860 19 H 0.113 0.887 20 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.358 1.927 -0.868 2.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.148 4.148 3 Si 0.745 3.255 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.458 4.458 8 H 0.109 0.891 9 C 0.043 3.957 10 C -0.140 4.140 11 C -0.175 4.175 12 C -0.003 4.003 13 O -0.289 6.289 14 N -0.229 5.229 15 C 0.023 3.977 16 F -0.116 7.116 17 H 0.101 0.899 18 H 0.158 0.842 19 H 0.131 0.869 20 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.877 1.303 -1.055 1.892 hybrid contribution -0.184 1.307 0.337 1.362 sum -1.060 2.610 -0.718 2.908 Atomic orbital electron populations 1.69794 1.07842 1.30454 1.32203 1.26056 0.94908 1.02037 0.91797 0.86114 0.80054 0.78803 0.80521 1.18355 1.19946 1.18481 1.19575 0.98499 0.90543 1.37185 0.89066 1.18260 0.93667 0.91676 0.92141 1.21204 0.97352 0.97266 0.98136 1.21352 1.00972 0.92456 1.02737 1.17983 0.93895 0.84617 1.03819 1.84821 1.54843 1.39048 1.50187 1.65581 1.10151 1.33080 1.14125 1.17856 0.90449 0.88957 1.00395 1.91402 1.50987 1.96908 1.72294 0.89947 0.84242 0.86913 0.78049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.42 10.92 55.54 0.61 -17.81 14 2 C 0.07 1.69 5.17 -17.33 -0.09 1.60 14 3 Si 0.92 17.28 29.59 -169.99 -5.03 12.25 14 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 14 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 14 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 14 7 C -0.43 -10.94 8.80 -37.86 -0.33 -11.27 14 8 H 0.09 2.26 7.73 -52.49 -0.41 1.85 14 9 C 0.05 1.28 5.60 -106.58 -0.60 0.69 14 10 C -0.11 -2.82 8.75 -39.02 -0.34 -3.16 14 11 C -0.15 -3.53 9.96 -39.70 -0.40 -3.92 14 12 C 0.18 4.23 7.74 -16.80 -0.13 4.10 14 13 O -0.49 -10.13 13.54 -18.16 -0.25 -10.38 14 14 N -0.51 -13.44 10.39 -12.89 -0.13 -13.57 14 15 C 0.18 4.88 8.45 -16.50 -0.14 4.74 14 16 F -0.14 -3.56 16.74 2.25 0.04 -3.52 14 17 H 0.29 6.12 8.30 -40.82 -0.34 5.78 14 18 H 0.14 3.38 6.19 -52.48 -0.32 3.06 14 19 H 0.11 2.23 8.06 -52.49 -0.42 1.81 14 20 H 0.37 5.74 9.06 45.56 0.41 6.15 14 LS Contribution 196.31 15.07 2.96 2.96 Total: -1.00 -28.39 196.31 -3.71 -32.10 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 0.13 Total: 5.20 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -2.03 Total: -7.23 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.47 Total: -31.38 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.25 Total: -10.38 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.04 Total: -3.52 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 2.96 Total: 2.96 kcal Total: -28.39 -3.71 -32.10 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238715191.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.580 kcal (2) G-P(sol) polarization free energy of solvation -28.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds