Wall clock time and date at job start Mon Mar 30 2020 02:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86796 * 119.99801 * 2 1 4 4 H 1.48496 * 109.47258 * 240.00125 * 3 2 1 5 5 H 1.48503 * 109.47498 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46845 * 120.00195 * 3 2 1 7 7 C 1.39879 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99725 * 197.51470 * 7 2 1 9 9 C 1.41154 * 120.00094 * 17.52019 * 7 2 1 10 10 C 1.41194 * 120.61379 * 23.75251 * 9 7 2 11 11 C 1.36698 * 118.41621 * 179.97438 * 10 9 7 12 12 C 1.39428 * 119.57715 * 359.97438 * 11 10 9 13 13 O 1.35489 * 119.38225 * 180.27848 * 12 11 10 14 14 N 1.32539 * 121.23625 * 0.02562 * 12 11 10 15 15 C 1.31758 * 121.71669 * 359.97438 * 14 12 11 16 16 F 1.35104 * 119.86098 * 180.02562 * 15 14 12 17 17 H 0.97004 * 120.00301 * 359.97438 * 1 2 3 18 18 H 1.08005 * 120.78967 * 359.97438 * 10 9 7 19 19 H 1.07996 * 120.20618 * 180.02562 * 11 10 9 20 20 H 0.96697 * 113.99967 * 269.72917 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2780 2.7465 0.0006 6 1 3.0968 1.6963 1.2125 7 6 2.0084 -1.2114 -0.0005 8 1 3.0509 -1.2332 0.2809 9 6 1.3517 -2.4053 -0.3691 10 6 0.2040 -2.3705 -1.1907 11 6 -0.3961 -3.5536 -1.5204 12 6 0.1348 -4.7512 -1.0428 13 8 -0.4598 -5.9219 -1.3768 14 7 1.2132 -4.7661 -0.2724 15 6 1.8310 -3.6557 0.0760 16 9 2.9278 -3.7145 0.8626 17 1 -0.4851 0.8401 0.0004 18 1 -0.1904 -1.4315 -1.5500 19 1 -1.2753 -3.5607 -2.1475 20 1 -1.1442 -6.2066 -0.7558 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238715191.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:02 Heat of formation + Delta-G solvation = -86.576520 kcal Electronic energy + Delta-G solvation = -10567.611056 eV Core-core repulsion = 8256.918546 eV Total energy + Delta-G solvation = -2310.692510 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.044 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.37762 -40.55932 -37.72496 -35.84794 -32.83118 -31.27631 -27.22768 -23.96931 -23.53640 -19.69977 -19.45595 -18.23099 -17.53596 -16.73858 -16.45551 -15.86273 -15.36090 -14.61147 -14.12781 -13.69947 -13.61177 -13.03826 -12.91743 -12.37076 -12.25508 -11.91287 -11.30057 -10.48299 -10.30341 -9.53407 -8.86975 -6.58626 0.42372 0.72712 1.39467 1.48713 1.53710 2.15101 2.45359 2.84853 3.33055 3.78410 4.30892 4.54406 4.74669 5.01861 5.19315 5.39059 5.69097 5.73771 6.23826 6.44446 6.53249 6.98665 7.22890 8.06704 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.061877 B = 0.014004 C = 0.011755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.402881 B = 1998.939036 C = 2381.489309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.040 3.960 3 Si 0.995 3.005 4 H -0.257 1.257 5 H -0.257 1.257 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.086 0.914 9 C 0.026 3.974 10 C -0.120 4.120 11 C -0.146 4.146 12 C 0.175 3.825 13 O -0.485 6.485 14 N -0.527 5.527 15 C 0.141 3.859 16 F -0.143 7.143 17 H 0.303 0.697 18 H 0.143 0.857 19 H 0.150 0.850 20 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.129 3.043 -1.385 3.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.179 4.179 3 Si 0.814 3.186 4 H -0.181 1.181 5 H -0.181 1.181 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.104 0.896 9 C 0.020 3.980 10 C -0.146 4.146 11 C -0.167 4.167 12 C -0.005 4.005 13 O -0.292 6.292 14 N -0.251 5.251 15 C -0.015 4.015 16 F -0.123 7.123 17 H 0.115 0.885 18 H 0.160 0.840 19 H 0.167 0.833 20 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.668 2.396 -1.556 3.309 hybrid contribution -0.061 0.893 0.479 1.015 sum -1.729 3.289 -1.077 3.869 Atomic orbital electron populations 1.69778 1.09004 1.32305 1.30993 1.26893 0.95700 1.04751 0.90595 0.85035 0.78810 0.74382 0.80375 1.18060 1.18109 1.18452 1.19818 0.98637 0.91653 1.38478 0.89619 1.18585 0.94615 0.91906 0.92894 1.21320 0.97069 0.98131 0.98061 1.21648 1.01540 0.91354 1.02162 1.18294 0.93454 0.85947 1.02800 1.84741 1.55583 1.37759 1.51091 1.65590 1.11170 1.33281 1.15041 1.18044 0.91503 0.89625 1.02327 1.91356 1.51325 1.96976 1.72606 0.88549 0.83959 0.83276 0.74967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.63 10.92 21.82 0.24 -36.39 14 2 C 0.04 1.81 5.17 85.23 0.44 2.25 14 3 Si 1.00 34.07 29.59 68.60 2.03 36.10 14 4 H -0.26 -8.65 7.11 99.48 0.71 -7.94 14 5 H -0.26 -8.05 7.11 99.48 0.71 -7.34 14 6 H -0.26 -8.87 7.11 99.48 0.71 -8.16 14 7 C -0.46 -23.53 8.80 23.38 0.21 -23.32 14 8 H 0.09 4.34 7.73 -2.91 -0.02 4.32 14 9 C 0.03 1.39 5.60 -21.13 -0.12 1.27 14 10 C -0.12 -5.86 8.75 22.64 0.20 -5.66 14 11 C -0.15 -6.44 9.96 22.20 0.22 -6.21 14 12 C 0.17 8.22 7.74 84.87 0.66 8.88 14 13 O -0.49 -19.09 13.54 -87.90 -1.19 -20.28 14 14 N -0.53 -28.04 10.39 -307.52 -3.19 -31.23 14 15 C 0.14 7.73 8.45 85.41 0.72 8.45 14 16 F -0.14 -7.72 16.74 44.97 0.75 -6.96 14 17 H 0.30 12.20 8.30 -92.71 -0.77 11.43 14 18 H 0.14 6.76 6.19 -2.91 -0.02 6.74 14 19 H 0.15 5.39 8.06 -2.91 -0.02 5.37 14 20 H 0.39 11.19 9.06 -74.06 -0.67 10.52 14 Total: -1.00 -59.75 196.31 1.58 -58.17 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.62 Total: 14.94 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 2.33 Total: -14.34 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -2.96 Total: -67.62 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -1.19 Total: -20.28 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 0.75 Total: -6.96 kcal Atomic # 14 Polarization: 34.07 SS G_CDS: 2.03 Total: 36.10 kcal Total: -59.75 1.58 -58.17 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238715191.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.404 kcal (2) G-P(sol) polarization free energy of solvation -59.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds