Wall clock time and date at job start Mon Mar 30 2020 02:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86796 * 120.00402 * 2 1 4 4 H 1.48501 * 109.47076 * 240.00221 * 3 2 1 5 5 H 1.48499 * 109.46963 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47323 * 119.99721 * 3 2 1 7 7 C 1.40048 * 119.99597 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00146 * 163.29009 * 7 2 1 9 9 C 1.41221 * 120.00189 * 343.56797 * 7 2 1 10 10 C 1.41169 * 121.05673 * 335.55291 * 9 7 2 11 11 C 1.36422 * 119.11355 * 179.72963 * 10 9 7 12 12 N 1.32207 * 121.38556 * 0.55790 * 11 10 9 13 13 C 1.31950 * 122.37603 * 359.71782 * 12 11 10 14 14 F 1.35106 * 119.65258 * 179.97438 * 13 12 11 15 15 C 1.38980 * 120.68913 * 359.97438 * 13 12 11 16 16 O 1.35683 * 120.72510 * 179.97438 * 15 13 12 17 17 H 0.96995 * 119.99523 * 0.02562 * 1 2 3 18 18 H 1.08007 * 120.44322 * 359.97438 * 10 9 7 19 19 H 1.08003 * 119.30880 * 180.27518 * 11 10 9 20 20 H 0.96710 * 114.00070 * 270.02916 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6176 0.0000 4 1 3.0956 1.6963 -1.2125 5 1 1.2769 2.7464 -0.0006 6 1 3.0956 1.6963 1.2125 7 6 2.0079 -1.2129 0.0005 8 1 3.0537 -1.2329 -0.2684 9 6 1.3450 -2.4108 0.3470 10 6 0.1918 -2.3957 1.1612 11 6 -0.4203 -3.5759 1.4668 12 7 0.0502 -4.7300 1.0258 13 6 1.1262 -4.8106 0.2664 14 9 1.5593 -6.0196 -0.1531 15 6 1.8187 -3.6647 -0.1063 16 8 2.9256 -3.7467 -0.8867 17 1 -0.4849 0.8400 -0.0004 18 1 -0.2028 -1.4619 1.5339 19 1 -1.3054 -3.5677 2.0858 20 1 3.7505 -3.8406 -0.3908 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238724796.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:39 Heat of formation + Delta-G solvation = -67.952988 kcal Electronic energy + Delta-G solvation = -10630.278057 eV Core-core repulsion = 8320.393123 eV Total energy + Delta-G solvation = -2309.884933 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.044 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.79493 -38.56162 -35.88107 -34.28365 -30.53088 -28.60384 -26.15141 -21.83388 -21.71413 -18.02769 -17.23488 -16.21375 -15.72128 -15.04611 -14.92454 -13.91257 -13.45328 -12.79962 -12.62581 -11.97514 -11.59617 -11.43458 -11.40842 -10.79413 -10.35470 -9.98262 -9.56115 -8.21876 -8.20563 -7.53139 -7.08049 -4.81943 2.36839 2.54333 2.91387 2.93934 3.05711 3.69734 4.37429 4.89461 5.18517 5.56924 6.00047 6.48284 6.63010 6.87384 7.05596 7.25036 7.49763 7.82913 8.09460 8.35849 8.45259 8.85426 9.17691 9.82147 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.063475 B = 0.014255 C = 0.011984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.009891 B = 1963.708414 C = 2335.888009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.426 4.426 8 H 0.089 0.911 9 C 0.122 3.878 10 C -0.210 4.210 11 C 0.106 3.894 12 N -0.598 5.598 13 C 0.289 3.711 14 F -0.139 7.139 15 C -0.095 4.095 16 O -0.477 6.477 17 H 0.289 0.711 18 H 0.135 0.865 19 H 0.133 0.867 20 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.436 2.117 1.933 3.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.147 4.147 3 Si 0.745 3.255 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.456 4.456 8 H 0.107 0.893 9 C 0.113 3.887 10 C -0.233 4.233 11 C -0.041 4.041 12 N -0.321 5.321 13 C 0.136 3.864 14 F -0.119 7.119 15 C -0.146 4.146 16 O -0.282 6.282 17 H 0.100 0.900 18 H 0.152 0.848 19 H 0.150 0.850 20 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.379 1.530 1.661 2.646 hybrid contribution 1.093 1.202 0.036 1.625 sum 2.472 2.732 1.697 4.056 Atomic orbital electron populations 1.69765 1.07913 1.30412 1.31525 1.26103 0.94898 1.02030 0.91707 0.86130 0.80068 0.78924 0.80394 1.18533 1.19939 1.18418 1.19518 0.98227 0.90268 1.37585 0.89294 1.18023 0.91453 0.91428 0.87771 1.21932 0.99604 0.98671 1.03100 1.21424 0.98020 0.87062 0.97600 1.66654 1.15621 1.31155 1.18623 1.18493 0.93531 0.79077 0.95305 1.91447 1.88298 1.44148 1.87984 1.19205 0.95886 0.91565 1.07939 1.84849 1.14537 1.95372 1.33438 0.89960 0.84784 0.84954 0.79430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.49 10.94 55.55 0.61 -17.88 14 2 C 0.07 1.74 5.20 -17.32 -0.09 1.64 14 3 Si 0.92 17.19 29.59 -169.99 -5.03 12.16 14 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 14 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 14 6 H -0.26 -4.77 7.11 56.52 0.40 -4.37 14 7 C -0.43 -10.72 8.80 -37.77 -0.33 -11.05 14 8 H 0.09 2.14 7.71 -52.48 -0.40 1.74 14 9 C 0.12 3.17 5.61 -106.41 -0.60 2.58 14 10 C -0.21 -5.22 8.73 -39.12 -0.34 -5.56 14 11 C 0.11 2.51 11.09 -18.05 -0.20 2.31 14 12 N -0.60 -15.13 10.34 -13.86 -0.14 -15.27 14 13 C 0.29 7.41 8.43 -17.23 -0.15 7.27 14 14 F -0.14 -3.38 17.15 2.25 0.04 -3.34 14 15 C -0.09 -2.42 6.80 -38.07 -0.26 -2.68 14 16 O -0.48 -11.15 12.80 -18.75 -0.24 -11.39 14 17 H 0.29 6.20 8.29 -40.82 -0.34 5.86 14 18 H 0.13 3.27 6.23 -52.48 -0.33 2.94 14 19 H 0.13 2.63 8.06 -52.48 -0.42 2.21 14 20 H 0.35 6.48 9.06 45.56 0.41 6.89 14 LS Contribution 196.14 15.07 2.96 2.96 Total: -1.00 -28.37 196.14 -3.65 -32.03 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.12 Total: 6.24 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -1.96 Total: -5.50 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.46 Total: -33.16 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.24 Total: -11.39 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.04 Total: -3.34 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 2.96 Total: 2.96 kcal Total: -28.37 -3.65 -32.03 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238724796.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.927 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds