Wall clock time and date at job start Mon Mar 30 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37807 * 122.61956 * 2 1 4 4 N 1.30086 * 116.87784 * 179.78808 * 3 2 1 5 5 S 1.69594 * 107.15299 * 0.44440 * 4 3 2 6 6 C 1.35141 * 122.61781 * 180.29321 * 2 1 3 7 7 C 1.50698 * 127.25100 * 359.97438 * 6 2 1 8 8 C 1.50697 * 109.47198 * 89.99646 * 7 6 2 9 9 H 1.07998 * 120.00083 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00065 * 179.97438 * 8 7 6 11 11 N 1.31508 * 119.99869 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00011 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.46757 * 90.00298 * 12 10 8 14 14 H 1.48497 * 109.46873 * 210.00525 * 12 10 8 15 15 H 1.48498 * 109.46889 * 330.00684 * 12 10 8 16 16 H 1.09002 * 109.47152 * 269.70706 * 1 2 3 17 17 H 1.09001 * 109.46980 * 149.70806 * 1 2 3 18 18 H 1.09004 * 109.47113 * 29.70787 * 1 2 3 19 19 H 1.07999 * 121.55927 * 0.02562 * 3 2 1 20 20 H 1.08993 * 109.47335 * 210.00143 * 7 6 2 21 21 H 1.09004 * 109.46869 * 329.99986 * 7 6 2 22 22 H 0.97007 * 120.00261 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2499 1.1607 0.0000 4 7 3.5442 1.0306 0.0043 5 16 3.8798 -0.6318 -0.0039 6 6 2.2355 -1.1383 -0.0058 7 6 1.7168 -2.5532 -0.0125 8 6 1.5433 -3.0178 -1.4355 9 1 1.7849 -2.3551 -2.2533 10 6 1.0772 -4.2895 -1.6935 11 7 0.7835 -5.0968 -0.6977 12 14 0.8628 -4.8658 -3.4574 13 1 2.1206 -5.4999 -3.9273 14 1 -0.2445 -5.8531 -3.5245 15 1 0.5418 -3.7024 -4.3226 16 1 -0.3633 -0.0053 1.0277 17 1 -0.3633 -0.8874 -0.5184 18 1 -0.3633 0.8926 -0.5093 19 1 1.7795 2.1329 0.0004 20 1 2.4275 -3.2031 0.4979 21 1 0.7563 -2.5905 0.5015 22 1 0.4551 -5.9914 -0.8792 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259461279.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:08 Heat of formation + Delta-G solvation = 0.696915 kcal Electronic energy + Delta-G solvation = -8802.845917 eV Core-core repulsion = 7062.151043 eV Total energy + Delta-G solvation = -1740.694874 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.92112 -35.69869 -33.66954 -30.93706 -27.82027 -25.44457 -23.93253 -19.66035 -18.67080 -18.49606 -16.66194 -15.87164 -15.39652 -14.57145 -14.31807 -13.89388 -13.43315 -13.39896 -13.04942 -12.68776 -12.60284 -11.95331 -11.73207 -11.70998 -11.30974 -10.62187 -10.05083 -9.40073 -8.24961 -6.37980 -0.05069 0.70268 1.10144 1.41368 1.41920 1.52918 1.67194 2.39619 3.08211 3.95779 4.18337 4.45118 4.68744 4.90894 4.97810 5.08416 5.24099 5.40601 5.53771 5.66462 5.80894 6.05477 6.71182 7.30959 8.84955 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.056270 B = 0.012426 C = 0.011713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.485474 B = 2252.772083 C = 2389.916314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.207 4.207 3 C 0.108 3.892 4 N -0.498 5.498 5 S 0.202 5.798 6 C -0.132 4.132 7 C 0.094 3.906 8 C -0.530 4.530 9 H 0.053 0.947 10 C 0.014 3.986 11 N -0.924 5.924 12 Si 0.964 3.036 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.266 1.266 16 H 0.075 0.925 17 H 0.051 0.949 18 H 0.092 0.908 19 H 0.219 0.781 20 H 0.011 0.989 21 H 0.030 0.970 22 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.429 8.488 0.250 8.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.222 4.222 3 C -0.090 4.090 4 N -0.317 5.317 5 S 0.355 5.645 6 C -0.262 4.262 7 C 0.055 3.945 8 C -0.569 4.569 9 H 0.072 0.928 10 C -0.185 4.185 11 N -0.563 5.563 12 Si 0.788 3.212 13 H -0.199 1.199 14 H -0.203 1.203 15 H -0.190 1.190 16 H 0.094 0.906 17 H 0.070 0.930 18 H 0.111 0.889 19 H 0.235 0.765 20 H 0.030 0.970 21 H 0.048 0.952 22 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.767 8.474 0.307 8.662 hybrid contribution -1.861 -0.668 -0.657 2.083 sum -0.093 7.806 -0.350 7.814 Atomic orbital electron populations 1.20337 0.87225 1.03203 1.02627 1.20410 1.00695 0.90675 1.10435 1.23154 0.88888 1.01218 0.95756 1.76744 1.18674 1.09048 1.27192 1.83781 1.09731 1.01051 1.69944 1.25892 0.98600 1.01803 0.99863 1.17579 0.95601 0.84082 0.97244 1.21214 1.44981 0.99033 0.91649 0.92833 1.25811 0.94552 0.96490 1.01689 1.70045 1.44888 1.08286 1.33079 0.85458 0.78078 0.78287 0.79346 1.19922 1.20277 1.19034 0.90641 0.93037 0.88940 0.76455 0.97043 0.95188 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.28 9.73 71.24 0.69 -1.59 14 2 C -0.21 -7.49 5.83 -20.68 -0.12 -7.61 14 3 C 0.11 3.41 11.06 84.85 0.94 4.35 14 4 N -0.50 -18.01 12.09 -62.60 -0.76 -18.77 14 5 S 0.20 7.99 23.72 -56.49 -1.34 6.65 14 6 C -0.13 -5.73 5.77 24.97 0.14 -5.58 14 7 C 0.09 4.81 4.98 29.10 0.15 4.95 14 8 C -0.53 -29.06 9.09 25.60 0.23 -28.83 14 9 H 0.05 2.93 7.74 -2.91 -0.02 2.91 14 10 C 0.01 0.77 5.46 84.66 0.46 1.23 14 11 N -0.92 -53.23 13.29 21.45 0.28 -52.95 14 12 Si 0.96 42.81 29.54 68.60 2.03 44.84 14 13 H -0.27 -11.89 7.11 99.48 0.71 -11.19 14 14 H -0.28 -11.94 7.11 99.48 0.71 -11.23 14 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 14 16 H 0.07 2.07 8.14 -2.39 -0.02 2.05 14 17 H 0.05 1.89 7.48 -2.39 -0.02 1.88 14 18 H 0.09 2.15 8.13 -2.38 -0.02 2.14 14 19 H 0.22 4.66 8.06 -2.91 -0.02 4.64 14 20 H 0.01 0.62 8.14 -2.39 -0.02 0.60 14 21 H 0.03 1.59 7.58 -2.39 -0.02 1.58 14 22 H 0.27 14.50 8.31 -92.70 -0.77 13.73 14 Total: -1.00 -60.87 215.47 3.92 -56.95 By element: Atomic # 1 Polarization: -4.85 SS G_CDS: 1.21 Total: -3.64 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 2.50 Total: -33.08 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -0.47 Total: -71.72 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 7.99 SS G_CDS: -1.34 Total: 6.65 kcal Total: -60.87 3.92 -56.95 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259461279.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.645 kcal (2) G-P(sol) polarization free energy of solvation -60.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds