Wall clock time and date at job start Mon Mar 30 2020 01:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.58566 * 60.00029 * 9 7 2 11 11 C 1.53235 * 109.58376 * 299.72788 * 9 7 2 12 12 N 1.47558 * 108.65306 * 240.26656 * 11 9 7 13 13 C 1.47316 * 110.11847 * 299.06577 * 12 11 9 14 14 C 1.53204 * 108.80264 * 60.87153 * 13 12 11 15 15 N 1.47273 * 109.58066 * 180.27271 * 9 7 2 16 16 C 1.47309 * 110.15465 * 58.97421 * 15 9 7 17 17 C 1.47309 * 110.23560 * 60.71037 * 12 11 9 18 18 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 19 19 H 1.08993 * 109.57978 * 0.02562 * 11 9 7 20 20 H 1.09003 * 109.58077 * 120.42330 * 11 9 7 21 21 H 1.09002 * 109.57964 * 301.08168 * 13 12 11 22 22 H 1.08994 * 109.58445 * 180.67238 * 13 12 11 23 23 H 1.09002 * 109.58633 * 240.21631 * 14 13 12 24 24 H 1.09004 * 109.69117 * 119.87640 * 14 13 12 25 25 H 1.09009 * 109.58424 * 180.60107 * 16 15 9 26 26 H 1.08996 * 109.58814 * 301.01014 * 16 15 9 27 27 H 1.09001 * 109.58448 * 58.97832 * 17 12 11 28 28 H 1.09001 * 109.58763 * 179.38967 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6240 -2.5590 -0.8891 11 6 0.3738 -2.5856 1.2539 12 7 0.7896 -3.7627 2.0406 13 6 0.6081 -4.9915 1.2485 14 6 1.4823 -4.9034 -0.0066 15 7 2.2059 -3.6203 0.0078 16 6 3.0723 -3.5415 1.1965 17 6 2.1979 -3.6293 2.4516 18 1 -0.4850 -0.8401 -0.0004 19 1 0.5002 -1.6828 1.8513 20 1 -0.6713 -2.6894 0.9619 21 1 -0.4382 -5.0881 0.9588 22 1 0.9064 -5.8559 1.8416 23 1 0.8529 -4.9580 -0.8948 24 1 2.1975 -5.7261 -0.0145 25 1 3.7819 -4.3690 1.1870 26 1 3.6123 -2.5947 1.1930 27 1 2.3208 -2.7242 3.0464 28 1 2.4906 -4.4985 3.0406 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259553389.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:18 Heat of formation + Delta-G solvation = 23.273558 kcal Electronic energy + Delta-G solvation = -11821.576779 eV Core-core repulsion = 9872.659787 eV Total energy + Delta-G solvation = -1948.916992 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.08465 -33.57901 -32.19180 -30.47406 -29.32006 -24.93380 -23.01829 -22.57773 -21.65771 -17.76656 -16.74884 -16.14041 -15.58712 -14.74883 -13.77871 -12.80130 -12.44845 -12.43389 -12.23155 -12.12866 -11.70302 -11.38923 -11.09730 -10.74051 -10.20953 -10.09366 -9.93154 -9.70267 -9.01572 -8.51379 -8.44242 -6.84545 -6.39528 -4.10906 3.42258 3.44081 3.62740 4.47956 4.56886 5.02823 5.24176 5.31726 5.51631 5.54020 5.91904 5.97554 6.08699 6.13044 6.21458 6.29652 6.43078 6.57939 6.70732 6.95427 7.12440 7.38620 7.45255 7.83163 8.00614 8.30185 8.49953 8.82245 9.58988 10.98080 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.063811 B = 0.015374 C = 0.014677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.687995 B = 1820.803521 C = 1907.284089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.019 3.981 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.584 4.584 8 H 0.056 0.944 9 C 0.166 3.834 10 H 0.033 0.967 11 C 0.023 3.977 12 N -0.526 5.526 13 C 0.012 3.988 14 C 0.009 3.991 15 N -0.510 5.510 16 C 0.023 3.977 17 C 0.020 3.980 18 H 0.270 0.730 19 H 0.085 0.915 20 H 0.052 0.948 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -6.576 2.723 7.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.185 4.185 3 Si 0.899 3.101 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.623 4.623 8 H 0.075 0.925 9 C 0.057 3.943 10 H 0.050 0.950 11 C -0.107 4.107 12 N -0.248 5.248 13 C -0.119 4.119 14 C -0.121 4.121 15 N -0.232 5.232 16 C -0.107 4.107 17 C -0.110 4.110 18 H 0.081 0.919 19 H 0.104 0.896 20 H 0.071 0.929 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.750 -4.912 2.712 6.248 hybrid contribution 0.114 -1.773 -0.048 1.777 sum 2.864 -6.685 2.663 7.745 Atomic orbital electron populations 1.70816 1.06787 1.30802 1.46302 1.25802 0.96492 1.02528 0.93721 0.83500 0.74834 0.75195 0.76539 1.21425 1.21481 1.20767 1.21878 0.94468 0.90280 1.55667 0.92546 1.20110 0.90883 0.89977 0.93313 0.94969 1.23309 0.98164 0.92155 0.97048 1.64041 1.19141 1.03044 1.38555 1.22805 1.00288 0.93783 0.95003 1.22842 0.97250 0.94014 0.98024 1.63854 1.20571 1.01679 1.37050 1.22704 0.95953 1.02454 0.89602 1.22706 0.88970 1.01555 0.97761 0.91863 0.89626 0.92920 0.91220 0.91496 0.91294 0.91660 0.92596 0.89287 0.90638 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.82 13.18 55.43 0.73 -26.09 15 2 C 0.02 0.53 5.02 -17.82 -0.09 0.44 15 3 Si 1.07 24.91 29.90 -169.99 -5.08 19.83 15 4 H -0.29 -6.48 7.11 56.52 0.40 -6.07 15 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.58 -16.18 7.71 -34.44 -0.27 -16.44 15 8 H 0.06 1.58 6.60 -52.49 -0.35 1.23 15 9 C 0.17 4.22 2.12 -68.54 -0.15 4.07 15 10 H 0.03 0.90 8.01 -51.93 -0.42 0.48 15 11 C 0.02 0.54 4.23 -3.34 -0.01 0.53 15 12 N -0.53 -10.94 5.44 -232.94 -1.27 -12.20 15 13 C 0.01 0.21 6.13 -3.49 -0.02 0.19 15 14 C 0.01 0.18 6.13 -3.49 -0.02 0.15 15 15 N -0.51 -11.46 5.24 -226.62 -1.19 -12.64 15 16 C 0.02 0.47 5.84 -3.49 -0.02 0.44 15 17 C 0.02 0.39 6.14 -3.49 -0.02 0.37 15 18 H 0.27 7.88 5.82 -40.82 -0.24 7.64 15 19 H 0.09 2.29 6.98 -51.93 -0.36 1.92 15 20 H 0.05 1.26 7.77 -51.93 -0.40 0.86 15 21 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 23 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.06 0.99 8.14 -51.92 -0.42 0.57 15 26 H 0.09 1.95 6.34 -51.93 -0.33 1.62 15 27 H 0.08 1.50 8.14 -51.93 -0.42 1.08 15 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 LS Contribution 216.94 15.07 3.27 3.27 Total: -1.00 -29.41 216.94 -7.99 -37.40 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -3.85 Total: 0.67 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.60 Total: -10.24 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -1.72 Total: -50.93 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.83 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -29.41 -7.99 -37.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259553389.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.670 kcal (2) G-P(sol) polarization free energy of solvation -29.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds