Wall clock time and date at job start Mon Mar 30 2020 02:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.33880 * 122.76038 * 2 1 4 4 O 1.21221 * 125.40114 * 0.02562 * 3 2 1 5 5 C 1.51684 * 109.23799 * 180.08333 * 3 2 1 6 6 C 1.54228 * 103.38363 * 359.87294 * 5 3 2 7 7 H 1.09002 * 110.60278 * 118.70904 * 6 5 3 8 8 C 1.50694 * 110.60825 * 241.52173 * 6 5 3 9 9 H 1.08000 * 120.00563 * 357.85472 * 8 6 5 10 10 C 1.37885 * 119.99902 * 177.85636 * 8 6 5 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.33872 * 122.76456 * 180.02562 * 2 1 3 17 17 O 1.21224 * 125.39772 * 359.97438 * 16 2 1 18 18 H 1.09002 * 109.47138 * 269.99950 * 1 2 3 19 19 H 1.09004 * 109.47168 * 29.99845 * 1 2 3 20 20 H 1.08993 * 109.47234 * 150.00003 * 1 2 3 21 21 H 1.09002 * 110.65159 * 241.43307 * 5 3 2 22 22 H 1.08998 * 110.71917 * 118.35449 * 5 3 2 23 23 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1894 1.1259 0.0000 4 8 1.7385 2.2511 0.0004 5 6 3.6642 0.7712 -0.0021 6 6 3.6605 -0.7711 0.0000 7 1 4.1481 -1.1571 -0.8952 8 6 4.3339 -1.3014 1.2394 9 1 4.7655 -0.6168 1.9546 10 6 4.3992 -2.6609 1.4605 11 7 3.8732 -3.4946 0.5899 12 14 5.2346 -3.3183 2.9965 13 1 6.6754 -3.5456 2.7176 14 1 5.0931 -2.3320 4.0976 15 1 4.5994 -4.6000 3.3953 16 6 2.1895 -1.1257 -0.0005 17 8 1.7385 -2.2510 -0.0006 18 1 -0.3633 0.0000 1.0277 19 1 -0.3634 0.8900 -0.5138 20 1 -0.3633 -0.8899 -0.5138 21 1 4.1531 1.1548 0.8934 22 1 4.1513 1.1525 -0.8996 23 1 3.9195 -4.4510 0.7453 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259587118.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:28 Heat of formation + Delta-G solvation = -65.065107 kcal Electronic energy + Delta-G solvation = -11185.240086 eV Core-core repulsion = 8998.940685 eV Total energy + Delta-G solvation = -2186.299401 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.67663 -37.42779 -34.63826 -33.68722 -31.50736 -26.91945 -25.68386 -23.55515 -20.89340 -18.73466 -16.88110 -16.26599 -15.57923 -15.06509 -14.58774 -13.66218 -13.24486 -12.96550 -12.63975 -12.17006 -12.03067 -12.01349 -11.04596 -10.89332 -10.66928 -10.27652 -9.54567 -9.35716 -8.86472 -8.74854 -8.50726 -6.13330 -4.26623 2.56868 3.23839 3.31881 3.34017 3.52593 3.93594 4.33419 5.11532 5.18678 5.53610 5.76266 5.83559 5.97742 6.03834 6.08888 6.38105 6.67411 7.18651 7.69812 7.79944 8.01418 8.27883 8.71234 9.13000 9.38341 10.89834 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.058297 B = 0.014935 C = 0.013188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.184509 B = 1874.310116 C = 2122.641536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.586 5.586 3 C 0.530 3.470 4 O -0.528 6.528 5 C -0.152 4.152 6 C 0.026 3.974 7 H 0.074 0.926 8 C -0.539 4.539 9 H 0.070 0.930 10 C 0.068 3.932 11 N -0.837 5.837 12 Si 0.898 3.102 13 H -0.277 1.277 14 H -0.272 1.272 15 H -0.285 1.285 16 C 0.514 3.486 17 O -0.454 6.454 18 H 0.059 0.941 19 H 0.073 0.927 20 H 0.077 0.923 21 H 0.109 0.891 22 H 0.097 0.903 23 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 4.423 -0.963 4.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.331 5.331 3 C 0.320 3.680 4 O -0.404 6.404 5 C -0.192 4.192 6 C 0.005 3.995 7 H 0.092 0.908 8 C -0.576 4.576 9 H 0.088 0.912 10 C -0.141 4.141 11 N -0.470 5.470 12 Si 0.725 3.275 13 H -0.203 1.203 14 H -0.197 1.197 15 H -0.211 1.211 16 C 0.304 3.696 17 O -0.320 6.320 18 H 0.078 0.922 19 H 0.092 0.908 20 H 0.096 0.904 21 H 0.127 0.873 22 H 0.115 0.885 23 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.262 4.108 -1.023 4.801 hybrid contribution 0.163 -0.474 0.895 1.026 sum -2.099 3.634 -0.128 4.199 Atomic orbital electron populations 1.21692 0.80092 1.03145 1.02368 1.47226 1.08190 1.10731 1.66984 1.21192 0.91121 0.83245 0.72393 1.90633 1.78777 1.21996 1.49001 1.22689 0.91712 1.00000 1.04760 1.19559 0.89314 0.89076 1.01557 0.90843 1.20754 1.38771 0.91984 1.06110 0.91173 1.25137 0.94822 0.97166 0.96942 1.70099 1.39645 1.02991 1.34270 0.86497 0.79518 0.78551 0.82947 1.20274 1.19699 1.21076 1.22578 0.91170 0.82899 0.72936 1.90659 1.77272 1.20862 1.43226 0.92249 0.90813 0.90384 0.87285 0.88452 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 10.58 59.84 0.63 1.82 14 2 N -0.59 -12.18 2.95 -122.58 -0.36 -12.54 14 3 C 0.53 10.71 8.09 -10.90 -0.09 10.62 14 4 O -0.53 -11.29 17.48 5.61 0.10 -11.19 14 5 C -0.15 -2.88 6.69 -26.76 -0.18 -3.06 14 6 C 0.03 0.61 2.99 -91.98 -0.27 0.34 14 7 H 0.07 1.77 8.14 -51.93 -0.42 1.35 14 8 C -0.54 -13.89 8.57 -34.44 -0.30 -14.19 14 9 H 0.07 1.73 7.39 -52.49 -0.39 1.34 14 10 C 0.07 1.82 5.31 -17.82 -0.09 1.73 14 11 N -0.84 -23.82 11.05 55.43 0.61 -23.21 14 12 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 14 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 14 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 14 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 14 16 C 0.51 12.43 7.27 -11.09 -0.08 12.35 14 17 O -0.45 -12.44 15.19 5.61 0.09 -12.35 14 18 H 0.06 0.96 8.14 -51.93 -0.42 0.53 14 19 H 0.07 1.13 7.83 -51.93 -0.41 0.72 14 20 H 0.08 1.29 7.83 -51.93 -0.41 0.88 14 21 H 0.11 1.99 7.47 -51.93 -0.39 1.60 14 22 H 0.10 1.56 8.14 -51.93 -0.42 1.14 14 23 H 0.27 7.23 8.31 -40.82 -0.34 6.89 14 LS Contribution 210.27 15.07 3.17 3.17 Total: -1.00 -30.46 210.27 -3.79 -34.25 By element: Atomic # 1 Polarization: -1.27 SS G_CDS: -1.99 Total: -3.26 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -0.38 Total: 9.60 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.25 Total: -35.75 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: 0.18 Total: -23.55 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -30.46 -3.79 -34.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259587118.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.813 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds