Wall clock time and date at job start Mon Mar 30 2020 02:17:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.33878 * 122.76150 * 2 1
4 4 O 1.21224 * 125.39638 * 0.02639 * 3 2 1
5 5 C 1.51313 * 109.20530 * 180.02562 * 3 2 1
6 6 C 1.54227 * 103.69342 * 359.92201 * 5 3 2
7 7 H 1.09001 * 110.61059 * 241.55663 * 6 5 3
8 8 C 1.50707 * 110.60570 * 118.59424 * 6 5 3
9 9 H 1.08001 * 119.99677 * 0.02562 * 8 6 5
10 10 C 1.37876 * 120.00016 * 179.97438 * 8 6 5
11 11 N 1.31519 * 119.99797 * 179.97438 * 10 8 6
12 12 Si 1.86799 * 120.00201 * 0.02562 * 10 8 6
13 13 H 1.48498 * 109.47525 * 89.99337 * 12 10 8
14 14 H 1.48501 * 109.46973 * 209.99673 * 12 10 8
15 15 H 1.48505 * 109.47025 * 329.99352 * 12 10 8
16 16 C 1.33871 * 122.75948 * 180.02562 * 2 1 3
17 17 O 1.21224 * 125.40294 * 359.97438 * 16 2 1
18 18 H 1.09000 * 109.47014 * 359.97010 * 1 2 3
19 19 H 1.09001 * 109.47615 * 119.97388 * 1 2 3
20 20 H 1.09002 * 109.46898 * 239.97584 * 1 2 3
21 21 H 1.09002 * 110.60607 * 118.51938 * 5 3 2
22 22 H 1.09002 * 110.60509 * 241.32619 * 5 3 2
23 23 H 0.96995 * 119.99678 * 180.02562 * 11 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1895 1.1258 0.0000
4 8 1.7385 2.2510 0.0005
5 6 3.6605 0.7711 -0.0006
6 6 3.6642 -0.7711 0.0010
7 1 4.1516 -1.1527 0.8982
8 6 4.3397 -1.3012 -1.2375
9 1 4.7374 -0.6156 -1.9711
10 6 4.4510 -2.6614 -1.4334
11 7 5.0401 -3.1240 -2.5145
12 14 3.7639 -3.8473 -0.1642
13 1 2.3522 -4.1656 -0.4973
14 1 4.5671 -5.0963 -0.1678
15 1 3.8262 -3.2227 1.1816
16 6 2.1894 -1.1258 -0.0005
17 8 1.7385 -2.2510 -0.0006
18 1 -0.3633 1.0277 0.0005
19 1 -0.3634 -0.5134 -0.8902
20 1 -0.3633 -0.5142 0.8898
21 1 4.1472 1.1550 -0.8972
22 1 4.1485 1.1569 0.8944
23 1 5.1181 -4.0809 -2.6525
RHF calculation, no. of doubly occupied orbitals= 33
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259587120.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:17:30
Heat of formation + Delta-G solvation = -86.394998 kcal
Electronic energy + Delta-G solvation = -11255.431663 eV
Core-core repulsion = 9068.207329 eV
Total energy + Delta-G solvation = -2187.224334 eV
No. of doubly occupied orbitals = 33
Molecular weight
(most abundant/longest-lived isotopes) = 183.068 amu
Computer time = 0.12 seconds
Orbital eigenvalues (eV)
-42.70631 -39.62930 -36.84576 -35.61569 -33.71237 -29.05864 -27.58273 -25.41168
-22.68319 -20.72403 -19.21939 -18.25590 -17.62057 -17.33654 -16.31171 -15.77157
-15.26081 -15.17118 -14.60133 -14.51274 -13.74931 -13.49930 -13.07259 -12.48274
-12.22189 -12.11523 -11.67050 -11.31025 -11.13153 -10.76401 -10.36636 -8.42073
-6.53306 0.57766 1.35667 1.48536 1.59900 1.79954 1.87455 2.36774
2.93373 3.37780 3.68944 3.91636 4.28929 4.34249 4.44584 4.56747
4.68128 4.97971 5.09140 5.32809 5.86448 6.06539 6.36528 6.57146
6.87267 7.16180 8.69624
Molecular weight = 183.07amu
Principal moments of inertia in cm(-1)
A = 0.055633 B = 0.017718 C = 0.014915
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 503.176129 B = 1579.955477 C = 1876.842949
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.060 3.940
2 N -0.579 5.579
3 C 0.537 3.463
4 O -0.522 6.522
5 C -0.132 4.132
6 C -0.022 4.022
7 H 0.098 0.902
8 C -0.520 4.520
9 H 0.067 0.933
10 C 0.032 3.968
11 N -0.925 5.925
12 Si 0.971 3.029
13 H -0.281 1.281
14 H -0.316 1.316
15 H -0.260 1.260
16 C 0.511 3.489
17 O -0.516 6.516
18 H 0.102 0.898
19 H 0.072 0.928
20 H 0.085 0.915
21 H 0.121 0.879
22 H 0.147 0.853
23 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.391 5.755 7.264 10.721
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 N -0.321 5.321
3 C 0.330 3.670
4 O -0.397 6.397
5 C -0.171 4.171
6 C -0.044 4.044
7 H 0.116 0.884
8 C -0.557 4.557
9 H 0.085 0.915
10 C -0.170 4.170
11 N -0.562 5.562
12 Si 0.804 3.196
13 H -0.208 1.208
14 H -0.246 1.246
15 H -0.185 1.185
16 C 0.305 3.695
17 O -0.393 6.393
18 H 0.121 0.879
19 H 0.090 0.910
20 H 0.104 0.896
21 H 0.139 0.861
22 H 0.164 0.836
23 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -5.856 5.634 7.158 10.829
hybrid contribution -0.450 -0.951 -0.038 1.053
sum -6.306 4.683 7.120 10.602
Atomic orbital electron populations
1.22063 0.76961 1.05104 1.03929 1.46863 1.10235 1.09380 1.65653
1.21237 0.91252 0.82861 0.71699 1.90678 1.78752 1.21815 1.48485
1.22517 0.91548 0.95006 1.08014 1.20227 0.88232 0.95250 1.00657
0.88447 1.20884 1.37193 0.92438 1.05190 0.91512 1.25803 0.93805
1.00493 0.96914 1.69994 1.43331 1.14876 1.28035 0.85299 0.76686
0.77369 0.80244 1.20835 1.24626 1.18533 1.22923 0.92682 0.83301
0.70644 1.90548 1.78145 1.21898 1.48749 0.87933 0.90957 0.89621
0.86064 0.83565 0.92046
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 1.69 10.65 127.77 1.36 3.05 14
2 N -0.58 -20.53 2.95 -779.56 -2.30 -22.83 14
3 C 0.54 18.25 8.08 87.99 0.71 18.96 14
4 O -0.52 -18.92 17.23 -2.86 -0.05 -18.97 14
5 C -0.13 -4.18 6.65 30.46 0.20 -3.98 14
6 C -0.02 -0.91 2.53 -11.56 -0.03 -0.94 14
7 H 0.10 3.75 7.04 -2.39 -0.02 3.74 14
8 C -0.52 -26.93 9.13 25.60 0.23 -26.69 14
9 H 0.07 3.68 7.63 -2.91 -0.02 3.66 14
10 C 0.03 1.77 5.46 84.65 0.46 2.23 14
11 N -0.92 -55.52 13.96 21.45 0.30 -55.22 14
12 Si 0.97 48.31 23.96 68.60 1.64 49.95 14
13 H -0.28 -14.79 6.13 99.48 0.61 -14.18 14
14 H -0.32 -15.57 7.11 99.48 0.71 -14.86 14
15 H -0.26 -11.88 6.46 99.48 0.64 -11.24 14
16 C 0.51 21.53 7.16 88.11 0.63 22.16 14
17 O -0.52 -24.73 12.07 -2.86 -0.03 -24.77 14
18 H 0.10 2.53 7.41 -2.39 -0.02 2.52 14
19 H 0.07 2.02 8.14 -2.39 -0.02 2.00 14
20 H 0.09 2.13 8.14 -2.39 -0.02 2.11 14
21 H 0.12 3.87 7.47 -2.39 -0.02 3.85 14
22 H 0.15 3.45 8.14 -2.39 -0.02 3.43 14
23 H 0.27 15.39 8.31 -92.71 -0.77 14.62 14
Total: -1.00 -65.57 201.81 4.18 -61.39
By element:
Atomic # 1 Polarization: -5.41 SS G_CDS: 1.06 Total: -4.35 kcal
Atomic # 6 Polarization: 11.22 SS G_CDS: 3.57 Total: 14.79 kcal
Atomic # 7 Polarization: -76.04 SS G_CDS: -2.00 Total: -78.05 kcal
Atomic # 8 Polarization: -43.65 SS G_CDS: -0.08 Total: -43.73 kcal
Atomic # 14 Polarization: 48.31 SS G_CDS: 1.64 Total: 49.95 kcal
Total: -65.57 4.18 -61.39 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259587120.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.004 kcal
(2) G-P(sol) polarization free energy of solvation -65.575 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.579 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.391 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.395 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.12 seconds