Wall clock time and date at job start Mon Mar 30 2020 02:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33878 * 122.76150 * 2 1 4 4 O 1.21224 * 125.39638 * 0.02639 * 3 2 1 5 5 C 1.51313 * 109.20530 * 180.02562 * 3 2 1 6 6 C 1.54227 * 103.69342 * 359.92201 * 5 3 2 7 7 H 1.09001 * 110.61059 * 241.55663 * 6 5 3 8 8 C 1.50707 * 110.60570 * 118.59424 * 6 5 3 9 9 H 1.08001 * 119.99677 * 0.02562 * 8 6 5 10 10 C 1.37876 * 120.00016 * 179.97438 * 8 6 5 11 11 N 1.31519 * 119.99797 * 179.97438 * 10 8 6 12 12 Si 1.86799 * 120.00201 * 0.02562 * 10 8 6 13 13 H 1.48498 * 109.47525 * 89.99337 * 12 10 8 14 14 H 1.48501 * 109.46973 * 209.99673 * 12 10 8 15 15 H 1.48505 * 109.47025 * 329.99352 * 12 10 8 16 16 C 1.33871 * 122.75948 * 180.02562 * 2 1 3 17 17 O 1.21224 * 125.40294 * 359.97438 * 16 2 1 18 18 H 1.09000 * 109.47014 * 359.97010 * 1 2 3 19 19 H 1.09001 * 109.47615 * 119.97388 * 1 2 3 20 20 H 1.09002 * 109.46898 * 239.97584 * 1 2 3 21 21 H 1.09002 * 110.60607 * 118.51938 * 5 3 2 22 22 H 1.09002 * 110.60509 * 241.32619 * 5 3 2 23 23 H 0.96995 * 119.99678 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1895 1.1258 0.0000 4 8 1.7385 2.2510 0.0005 5 6 3.6605 0.7711 -0.0006 6 6 3.6642 -0.7711 0.0010 7 1 4.1516 -1.1527 0.8982 8 6 4.3397 -1.3012 -1.2375 9 1 4.7374 -0.6156 -1.9711 10 6 4.4510 -2.6614 -1.4334 11 7 5.0401 -3.1240 -2.5145 12 14 3.7639 -3.8473 -0.1642 13 1 2.3522 -4.1656 -0.4973 14 1 4.5671 -5.0963 -0.1678 15 1 3.8262 -3.2227 1.1816 16 6 2.1894 -1.1258 -0.0005 17 8 1.7385 -2.2510 -0.0006 18 1 -0.3633 1.0277 0.0005 19 1 -0.3634 -0.5134 -0.8902 20 1 -0.3633 -0.5142 0.8898 21 1 4.1472 1.1550 -0.8972 22 1 4.1485 1.1569 0.8944 23 1 5.1181 -4.0809 -2.6525 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259587120.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:30 Heat of formation + Delta-G solvation = -86.394998 kcal Electronic energy + Delta-G solvation = -11255.431663 eV Core-core repulsion = 9068.207329 eV Total energy + Delta-G solvation = -2187.224334 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.70631 -39.62930 -36.84576 -35.61569 -33.71237 -29.05864 -27.58273 -25.41168 -22.68319 -20.72403 -19.21939 -18.25590 -17.62057 -17.33654 -16.31171 -15.77157 -15.26081 -15.17118 -14.60133 -14.51274 -13.74931 -13.49930 -13.07259 -12.48274 -12.22189 -12.11523 -11.67050 -11.31025 -11.13153 -10.76401 -10.36636 -8.42073 -6.53306 0.57766 1.35667 1.48536 1.59900 1.79954 1.87455 2.36774 2.93373 3.37780 3.68944 3.91636 4.28929 4.34249 4.44584 4.56747 4.68128 4.97971 5.09140 5.32809 5.86448 6.06539 6.36528 6.57146 6.87267 7.16180 8.69624 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.055633 B = 0.017718 C = 0.014915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.176129 B = 1579.955477 C = 1876.842949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.579 5.579 3 C 0.537 3.463 4 O -0.522 6.522 5 C -0.132 4.132 6 C -0.022 4.022 7 H 0.098 0.902 8 C -0.520 4.520 9 H 0.067 0.933 10 C 0.032 3.968 11 N -0.925 5.925 12 Si 0.971 3.029 13 H -0.281 1.281 14 H -0.316 1.316 15 H -0.260 1.260 16 C 0.511 3.489 17 O -0.516 6.516 18 H 0.102 0.898 19 H 0.072 0.928 20 H 0.085 0.915 21 H 0.121 0.879 22 H 0.147 0.853 23 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 5.755 7.264 10.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.321 5.321 3 C 0.330 3.670 4 O -0.397 6.397 5 C -0.171 4.171 6 C -0.044 4.044 7 H 0.116 0.884 8 C -0.557 4.557 9 H 0.085 0.915 10 C -0.170 4.170 11 N -0.562 5.562 12 Si 0.804 3.196 13 H -0.208 1.208 14 H -0.246 1.246 15 H -0.185 1.185 16 C 0.305 3.695 17 O -0.393 6.393 18 H 0.121 0.879 19 H 0.090 0.910 20 H 0.104 0.896 21 H 0.139 0.861 22 H 0.164 0.836 23 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.856 5.634 7.158 10.829 hybrid contribution -0.450 -0.951 -0.038 1.053 sum -6.306 4.683 7.120 10.602 Atomic orbital electron populations 1.22063 0.76961 1.05104 1.03929 1.46863 1.10235 1.09380 1.65653 1.21237 0.91252 0.82861 0.71699 1.90678 1.78752 1.21815 1.48485 1.22517 0.91548 0.95006 1.08014 1.20227 0.88232 0.95250 1.00657 0.88447 1.20884 1.37193 0.92438 1.05190 0.91512 1.25803 0.93805 1.00493 0.96914 1.69994 1.43331 1.14876 1.28035 0.85299 0.76686 0.77369 0.80244 1.20835 1.24626 1.18533 1.22923 0.92682 0.83301 0.70644 1.90548 1.78145 1.21898 1.48749 0.87933 0.90957 0.89621 0.86064 0.83565 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.69 10.65 127.77 1.36 3.05 14 2 N -0.58 -20.53 2.95 -779.56 -2.30 -22.83 14 3 C 0.54 18.25 8.08 87.99 0.71 18.96 14 4 O -0.52 -18.92 17.23 -2.86 -0.05 -18.97 14 5 C -0.13 -4.18 6.65 30.46 0.20 -3.98 14 6 C -0.02 -0.91 2.53 -11.56 -0.03 -0.94 14 7 H 0.10 3.75 7.04 -2.39 -0.02 3.74 14 8 C -0.52 -26.93 9.13 25.60 0.23 -26.69 14 9 H 0.07 3.68 7.63 -2.91 -0.02 3.66 14 10 C 0.03 1.77 5.46 84.65 0.46 2.23 14 11 N -0.92 -55.52 13.96 21.45 0.30 -55.22 14 12 Si 0.97 48.31 23.96 68.60 1.64 49.95 14 13 H -0.28 -14.79 6.13 99.48 0.61 -14.18 14 14 H -0.32 -15.57 7.11 99.48 0.71 -14.86 14 15 H -0.26 -11.88 6.46 99.48 0.64 -11.24 14 16 C 0.51 21.53 7.16 88.11 0.63 22.16 14 17 O -0.52 -24.73 12.07 -2.86 -0.03 -24.77 14 18 H 0.10 2.53 7.41 -2.39 -0.02 2.52 14 19 H 0.07 2.02 8.14 -2.39 -0.02 2.00 14 20 H 0.09 2.13 8.14 -2.39 -0.02 2.11 14 21 H 0.12 3.87 7.47 -2.39 -0.02 3.85 14 22 H 0.15 3.45 8.14 -2.39 -0.02 3.43 14 23 H 0.27 15.39 8.31 -92.71 -0.77 14.62 14 Total: -1.00 -65.57 201.81 4.18 -61.39 By element: Atomic # 1 Polarization: -5.41 SS G_CDS: 1.06 Total: -4.35 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 3.57 Total: 14.79 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -2.00 Total: -78.05 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -0.08 Total: -43.73 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.64 Total: 49.95 kcal Total: -65.57 4.18 -61.39 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259587120.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.004 kcal (2) G-P(sol) polarization free energy of solvation -65.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds