Wall clock time and date at job start Mon Mar 30 2020 02:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35134 * 127.25316 * 2 1 4 4 C 1.37810 * 114.76269 * 180.02562 * 3 2 1 5 5 C 1.50697 * 121.55833 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46950 * 125.00430 * 5 4 3 7 7 H 1.08006 * 119.99868 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00188 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00111 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00034 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47064 * 90.00202 * 10 8 6 12 12 H 1.48503 * 109.47199 * 210.00038 * 10 8 6 13 13 H 1.48496 * 109.47060 * 329.99899 * 10 8 6 14 14 N 1.30082 * 116.88198 * 0.02562 * 4 3 2 15 15 S 1.69611 * 107.15086 * 359.97438 * 14 4 3 16 16 H 1.08995 * 109.47614 * 180.02562 * 1 2 3 17 17 H 1.09002 * 109.46571 * 300.02353 * 1 2 3 18 18 H 1.09004 * 109.47129 * 60.01842 * 1 2 3 19 19 H 1.07997 * 122.61766 * 359.97438 * 3 2 1 20 20 H 1.08994 * 109.47650 * 245.00010 * 5 4 3 21 21 H 1.08993 * 109.47687 * 5.00880 * 5 4 3 22 22 H 0.97001 * 120.00156 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3250 1.0756 0.0000 4 6 3.6705 0.7776 -0.0006 5 6 4.7182 1.8607 -0.0012 6 6 5.6538 1.6552 1.1623 7 1 5.5048 0.8232 1.8346 8 6 6.7000 2.5293 1.3684 9 7 7.5161 2.3503 2.3840 10 14 6.9581 3.9679 0.2051 11 1 6.2022 5.1464 0.6999 12 1 8.4043 4.2990 0.1406 13 1 6.4732 3.6020 -1.1499 14 7 3.9938 -0.4824 -0.0015 15 16 2.5483 -1.3697 -0.0011 16 1 -0.3634 -1.0276 0.0005 17 1 -0.3632 0.5142 0.8898 18 1 -0.3633 0.5136 -0.8902 19 1 1.9533 2.0896 -0.0004 20 1 5.2826 1.8198 -0.9328 21 1 4.2352 2.8336 0.0886 22 1 8.2524 2.9650 2.5289 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259768816.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:34 Heat of formation + Delta-G solvation = 26.204636 kcal Electronic energy + Delta-G solvation = -8679.737021 eV Core-core repulsion = 6940.148245 eV Total energy + Delta-G solvation = -1739.588776 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.48210 -33.31127 -32.32334 -29.43998 -27.47945 -23.80702 -20.77679 -18.73501 -17.38378 -16.62204 -14.71985 -14.23926 -13.88143 -13.12742 -12.93434 -12.64869 -12.50636 -11.89450 -11.72230 -10.75831 -10.66200 -10.42664 -10.02616 -9.55526 -9.38072 -8.82548 -8.58512 -7.95789 -6.06339 -4.05585 1.28142 2.02838 2.55083 3.19445 3.28467 3.36320 3.37900 4.40706 4.90379 5.25760 5.28395 5.51940 5.72349 5.79818 6.03029 6.21710 6.58570 6.72340 6.99327 7.50905 7.70354 8.48896 9.00253 9.51639 11.06853 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.073672 B = 0.010930 C = 0.010165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.970513 B = 2561.136622 C = 2753.807514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.181 4.181 3 C -0.199 4.199 4 C 0.158 3.842 5 C 0.047 3.953 6 C -0.510 4.510 7 H 0.077 0.923 8 C 0.069 3.931 9 N -0.898 5.898 10 Si 0.877 3.123 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.264 1.264 14 N -0.432 5.432 15 S 0.174 5.826 16 H 0.068 0.932 17 H 0.077 0.923 18 H 0.076 0.924 19 H 0.150 0.850 20 H 0.043 0.957 21 H 0.036 0.964 22 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.728 -2.006 -5.840 14.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.311 4.311 3 C -0.234 4.234 4 C -0.020 4.020 5 C 0.005 3.995 6 C -0.549 4.549 7 H 0.095 0.905 8 C -0.133 4.133 9 N -0.537 5.537 10 Si 0.704 3.296 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.189 1.189 14 N -0.251 5.251 15 S 0.327 5.673 16 H 0.087 0.913 17 H 0.096 0.904 18 H 0.095 0.905 19 H 0.168 0.832 20 H 0.060 0.940 21 H 0.054 0.946 22 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.699 -4.018 -5.753 13.642 hybrid contribution -0.280 2.579 -0.404 2.625 sum -11.979 -1.439 -6.157 13.546 Atomic orbital electron populations 1.20197 0.87068 1.02843 1.02998 1.25263 1.01309 0.98754 1.05737 1.21236 0.92160 1.00922 1.09120 1.21925 0.94553 0.93056 0.92432 1.18628 0.91776 0.89694 0.99404 1.20890 1.10450 1.13413 1.10126 0.90497 1.24971 0.95450 0.97627 0.95207 1.69898 1.16785 1.37795 1.29175 0.86818 0.77678 0.83015 0.82079 1.20056 1.21096 1.18910 1.77055 1.14897 1.07758 1.25412 1.83819 0.96119 1.16543 1.70847 0.91286 0.90415 0.90509 0.83231 0.93955 0.94588 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.46 36.00 0.38 -0.40 14 2 C -0.18 -2.85 6.60 -35.41 -0.23 -3.08 14 3 C -0.20 -3.60 9.85 -40.84 -0.40 -4.00 14 4 C 0.16 3.52 6.03 -83.49 -0.50 3.02 14 5 C 0.05 1.14 4.51 -29.03 -0.13 1.01 14 6 C -0.51 -14.88 9.51 -34.44 -0.33 -15.21 14 7 H 0.08 2.50 7.96 -52.48 -0.42 2.08 14 8 C 0.07 2.02 5.47 -17.82 -0.10 1.92 14 9 N -0.90 -27.91 13.96 55.43 0.77 -27.14 14 10 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 14 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 14 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 14 13 H -0.26 -6.10 6.54 56.52 0.37 -5.73 14 14 N -0.43 -9.96 11.83 32.03 0.38 -9.58 14 15 S 0.17 3.08 23.72 -107.50 -2.55 0.53 14 16 H 0.07 0.64 8.14 -51.93 -0.42 0.22 14 17 H 0.08 0.75 8.14 -51.93 -0.42 0.33 14 18 H 0.08 0.70 8.14 -51.93 -0.42 0.28 14 19 H 0.15 2.32 8.06 -52.49 -0.42 1.90 14 20 H 0.04 1.03 7.20 -51.93 -0.37 0.66 14 21 H 0.04 0.81 7.43 -51.93 -0.39 0.42 14 22 H 0.26 7.64 8.31 -40.82 -0.34 7.30 14 LS Contribution 213.53 15.07 3.22 3.22 Total: -1.00 -32.00 213.53 -6.20 -38.20 By element: Atomic # 1 Polarization: -3.03 SS G_CDS: -2.04 Total: -5.06 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -1.32 Total: -16.74 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 1.15 Total: -36.72 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.55 Total: 0.53 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -32.00 -6.20 -38.20 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768816.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.408 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds