Wall clock time and date at job start Mon Mar 30 2020 02:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35134 * 127.25316 * 2 1 4 4 C 1.37810 * 114.76269 * 180.02562 * 3 2 1 5 5 C 1.50697 * 121.55833 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46950 * 125.00430 * 5 4 3 7 7 H 1.08006 * 119.99868 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00188 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00111 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00034 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47064 * 90.00202 * 10 8 6 12 12 H 1.48503 * 109.47199 * 210.00038 * 10 8 6 13 13 H 1.48496 * 109.47060 * 329.99899 * 10 8 6 14 14 N 1.30082 * 116.88198 * 0.02562 * 4 3 2 15 15 S 1.69611 * 107.15086 * 359.97438 * 14 4 3 16 16 H 1.08995 * 109.47614 * 180.02562 * 1 2 3 17 17 H 1.09002 * 109.46571 * 300.02353 * 1 2 3 18 18 H 1.09004 * 109.47129 * 60.01842 * 1 2 3 19 19 H 1.07997 * 122.61766 * 359.97438 * 3 2 1 20 20 H 1.08994 * 109.47650 * 245.00010 * 5 4 3 21 21 H 1.08993 * 109.47687 * 5.00880 * 5 4 3 22 22 H 0.97001 * 120.00156 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3250 1.0756 0.0000 4 6 3.6705 0.7776 -0.0006 5 6 4.7182 1.8607 -0.0012 6 6 5.6538 1.6552 1.1623 7 1 5.5048 0.8232 1.8346 8 6 6.7000 2.5293 1.3684 9 7 7.5161 2.3503 2.3840 10 14 6.9581 3.9679 0.2051 11 1 6.2022 5.1464 0.6999 12 1 8.4043 4.2990 0.1406 13 1 6.4732 3.6020 -1.1499 14 7 3.9938 -0.4824 -0.0015 15 16 2.5483 -1.3697 -0.0011 16 1 -0.3634 -1.0276 0.0005 17 1 -0.3632 0.5142 0.8898 18 1 -0.3633 0.5136 -0.8902 19 1 1.9533 2.0896 -0.0004 20 1 5.2826 1.8198 -0.9328 21 1 4.2352 2.8336 0.0886 22 1 8.2524 2.9650 2.5289 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259768816.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:33 Heat of formation + Delta-G solvation = 4.177322 kcal Electronic energy + Delta-G solvation = -8680.692197 eV Core-core repulsion = 6940.148245 eV Total energy + Delta-G solvation = -1740.543952 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.99387 -35.20645 -33.88991 -31.42003 -28.70591 -25.71484 -22.32337 -20.29705 -19.14900 -18.46734 -16.55029 -15.79592 -15.33356 -14.76997 -14.32448 -14.10111 -13.85013 -13.40375 -13.34288 -12.57290 -12.41369 -11.91962 -11.81839 -11.60170 -11.11824 -10.79477 -10.21044 -9.44325 -8.30088 -6.36664 -0.11319 0.68492 1.02327 1.37975 1.42295 1.53235 1.66088 2.36281 3.04232 3.70982 4.23943 4.43301 4.57451 4.78400 4.83275 4.89868 5.00072 5.10063 5.27327 5.50859 6.00184 6.24697 6.68100 7.25154 8.87327 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.073672 B = 0.010930 C = 0.010165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.970513 B = 2561.136622 C = 2753.807514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.149 4.149 3 C -0.223 4.223 4 C 0.138 3.862 5 C 0.049 3.951 6 C -0.522 4.522 7 H 0.021 0.979 8 C 0.004 3.996 9 N -0.952 5.952 10 Si 0.959 3.041 11 H -0.255 1.255 12 H -0.285 1.285 13 H -0.243 1.243 14 N -0.502 5.502 15 S 0.197 5.803 16 H 0.087 0.913 17 H 0.096 0.904 18 H 0.103 0.897 19 H 0.178 0.822 20 H 0.041 0.959 21 H 0.062 0.938 22 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.166 -0.768 -7.385 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.279 4.279 3 C -0.257 4.257 4 C -0.039 4.039 5 C 0.007 3.993 6 C -0.560 4.560 7 H 0.039 0.961 8 C -0.193 4.193 9 N -0.592 5.592 10 Si 0.781 3.219 11 H -0.179 1.179 12 H -0.210 1.210 13 H -0.166 1.166 14 N -0.323 5.323 15 S 0.350 5.650 16 H 0.106 0.894 17 H 0.115 0.885 18 H 0.122 0.878 19 H 0.195 0.805 20 H 0.059 0.941 21 H 0.080 0.920 22 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.161 -2.781 -7.303 16.174 hybrid contribution 0.373 2.016 0.147 2.055 sum -13.788 -0.766 -7.157 15.553 Atomic orbital electron populations 1.20486 0.82838 1.04837 1.05071 1.25932 1.03555 0.96600 1.01797 1.21350 0.90538 1.03014 1.10762 1.21956 0.95953 0.92433 0.93568 1.18501 0.91815 0.91989 0.96947 1.21068 1.12165 1.11801 1.11004 0.96100 1.26075 0.94699 1.01306 0.97208 1.70078 1.17795 1.39616 1.31717 0.85541 0.77762 0.78583 0.80060 1.17929 1.21030 1.16637 1.76797 1.19192 1.08926 1.27347 1.83588 0.94651 1.16375 1.70362 0.89434 0.88515 0.87830 0.80486 0.94094 0.92017 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.46 71.24 0.75 -0.47 14 2 C -0.15 -4.23 6.60 24.97 0.16 -4.06 14 3 C -0.22 -7.58 9.85 21.45 0.21 -7.37 14 4 C 0.14 6.13 6.03 42.72 0.26 6.39 14 5 C 0.05 2.39 4.51 29.10 0.13 2.52 14 6 C -0.52 -31.53 9.51 25.60 0.24 -31.29 14 7 H 0.02 1.44 7.96 -2.91 -0.02 1.42 14 8 C 0.00 0.23 5.47 84.65 0.46 0.69 14 9 N -0.95 -61.23 13.96 21.45 0.30 -60.93 14 10 Si 0.96 43.62 27.47 68.60 1.88 45.51 14 11 H -0.25 -10.75 7.11 99.48 0.71 -10.04 14 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 14 13 H -0.24 -10.14 6.54 99.48 0.65 -9.49 14 14 N -0.50 -23.66 11.83 -52.58 -0.62 -24.28 14 15 S 0.20 6.78 23.72 -56.49 -1.34 5.44 14 16 H 0.09 1.17 8.14 -2.39 -0.02 1.15 14 17 H 0.10 1.36 8.14 -2.39 -0.02 1.34 14 18 H 0.10 1.29 8.14 -2.38 -0.02 1.27 14 19 H 0.18 4.89 8.06 -2.91 -0.02 4.87 14 20 H 0.04 1.98 7.20 -2.39 -0.02 1.96 14 21 H 0.06 2.65 7.43 -2.39 -0.02 2.63 14 22 H 0.27 15.94 8.31 -92.71 -0.77 15.17 14 Total: -1.00 -73.28 213.53 3.59 -69.68 By element: Atomic # 1 Polarization: -2.99 SS G_CDS: 1.15 Total: -1.84 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 2.22 Total: -33.58 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -0.32 Total: -85.21 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.51 kcal Atomic # 16 Polarization: 6.78 SS G_CDS: -1.34 Total: 5.44 kcal Total: -73.28 3.59 -69.68 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768816.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.861 kcal (2) G-P(sol) polarization free energy of solvation -73.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds