Wall clock time and date at job start Mon Mar 30 2020 02:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.72047 * 127.25383 * 2 1 4 4 N 1.69599 * 95.70806 * 180.19463 * 3 2 1 5 5 C 1.30078 * 107.14953 * 359.82243 * 4 3 2 6 6 C 1.35140 * 127.24613 * 179.87293 * 2 1 3 7 7 C 1.50703 * 122.62076 * 0.02604 * 6 2 1 8 8 C 1.50701 * 109.47064 * 84.73301 * 7 6 2 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 H 1.08992 * 109.46991 * 270.12763 * 1 2 3 17 17 H 1.09004 * 109.46949 * 30.13058 * 1 2 3 18 18 H 1.09000 * 109.47032 * 150.12222 * 1 2 3 19 19 H 1.08007 * 121.56038 * 179.97438 * 5 4 3 20 20 H 1.09002 * 109.47152 * 324.73393 * 7 6 2 21 21 H 1.09001 * 109.46980 * 204.73494 * 7 6 2 22 22 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5485 1.3694 0.0000 4 7 3.9938 0.4821 -0.0057 5 6 3.6704 -0.7778 -0.0036 6 6 2.3249 -1.0758 0.0024 7 6 1.8062 -2.4907 0.0049 8 6 1.5114 -2.9202 -1.4092 9 1 1.6828 -2.2371 -2.2279 10 6 1.0236 -4.1857 -1.6578 11 7 0.8153 -5.0177 -0.6609 12 14 0.6589 -4.7182 -3.4107 13 1 1.9031 -4.6483 -4.2184 14 1 0.1476 -6.1125 -3.4081 15 1 -0.3646 -3.8173 -3.9990 16 1 -0.3633 0.0023 1.0276 17 1 -0.3633 0.8888 -0.5159 18 1 -0.3633 -0.8911 -0.5119 19 1 4.4213 -1.5542 -0.0068 20 1 0.8931 -2.5419 0.5981 21 1 2.5574 -3.1523 0.4365 22 1 0.4718 -5.9078 -0.8358 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259783362.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:35 Heat of formation + Delta-G solvation = 2.723064 kcal Electronic energy + Delta-G solvation = -8835.114394 eV Core-core repulsion = 7094.507381 eV Total energy + Delta-G solvation = -1740.607014 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.97303 -35.38681 -33.86844 -30.94065 -27.88800 -25.18189 -24.00402 -19.72028 -18.56366 -18.47222 -16.64916 -15.87964 -15.40291 -14.49430 -14.24874 -13.86118 -13.63843 -13.35573 -13.12128 -12.74700 -12.53563 -12.16699 -11.68226 -11.57729 -11.16941 -10.56459 -10.07064 -9.32818 -8.17275 -6.29425 -0.14479 0.68653 1.01101 1.42580 1.43979 1.51792 1.69145 2.43839 3.14367 3.87326 4.24206 4.41256 4.63236 4.76443 5.00022 5.07288 5.27231 5.40218 5.51881 5.76609 5.90085 6.19768 6.81472 7.38916 8.91401 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.062021 B = 0.011731 C = 0.011385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.350652 B = 2386.214536 C = 2458.815222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.171 4.171 3 S 0.235 5.765 4 N -0.494 5.494 5 C 0.100 3.900 6 C -0.164 4.164 7 C 0.091 3.909 8 C -0.525 4.525 9 H 0.050 0.950 10 C 0.012 3.988 11 N -0.926 5.926 12 Si 0.958 3.042 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.268 1.268 16 H 0.090 0.910 17 H 0.093 0.907 18 H 0.070 0.930 19 H 0.188 0.812 20 H 0.014 0.986 21 H 0.009 0.991 22 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 8.736 0.418 8.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.301 4.301 3 S 0.388 5.612 4 N -0.314 5.314 5 C -0.098 4.098 6 C -0.179 4.179 7 C 0.051 3.949 8 C -0.563 4.563 9 H 0.069 0.931 10 C -0.186 4.186 11 N -0.566 5.566 12 Si 0.783 3.217 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.193 1.193 16 H 0.109 0.891 17 H 0.111 0.889 18 H 0.088 0.912 19 H 0.205 0.795 20 H 0.033 0.967 21 H 0.027 0.973 22 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.310 10.626 0.461 10.640 hybrid contribution -0.600 -2.511 -0.727 2.682 sum -0.290 8.115 -0.266 8.124 Atomic orbital electron populations 1.20319 0.85264 1.03947 1.03721 1.25448 1.02971 0.97004 1.04662 1.83256 0.93766 1.14128 1.70087 1.76641 1.20212 1.08023 1.26508 1.22858 0.96490 0.93771 0.96685 1.20598 0.92550 0.99457 1.05285 1.17650 0.95182 0.85755 0.96332 1.21280 1.43513 0.98669 0.92874 0.93130 1.25777 0.95252 0.96550 1.01069 1.70047 1.46020 1.07597 1.32939 0.85608 0.78776 0.77349 0.79976 1.19741 1.20767 1.19276 0.89107 0.88861 0.91156 0.79524 0.96729 0.97269 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 9.95 71.24 0.71 -1.58 14 2 C -0.17 -6.30 6.58 24.97 0.16 -6.13 14 3 S 0.24 7.68 23.72 -56.49 -1.34 6.34 14 4 N -0.49 -18.59 12.09 -62.61 -0.76 -19.35 14 5 C 0.10 3.91 11.05 84.85 0.94 4.85 14 6 C -0.16 -6.94 5.02 -20.68 -0.10 -7.05 14 7 C 0.09 4.56 4.73 29.10 0.14 4.70 14 8 C -0.53 -28.48 9.09 25.60 0.23 -28.25 14 9 H 0.05 2.73 7.74 -2.91 -0.02 2.71 14 10 C 0.01 0.67 5.46 84.66 0.46 1.13 14 11 N -0.93 -53.46 13.29 21.45 0.28 -53.18 14 12 Si 0.96 42.79 29.54 68.60 2.03 44.82 14 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 14 14 H -0.28 -12.34 7.11 99.48 0.71 -11.63 14 15 H -0.27 -11.53 7.11 99.48 0.71 -10.82 14 16 H 0.09 2.47 8.14 -2.39 -0.02 2.45 14 17 H 0.09 2.31 8.14 -2.39 -0.02 2.29 14 18 H 0.07 2.58 7.70 -2.39 -0.02 2.56 14 19 H 0.19 6.70 8.06 -2.91 -0.02 6.68 14 20 H 0.01 0.77 7.75 -2.39 -0.02 0.75 14 21 H 0.01 0.48 8.11 -2.39 -0.02 0.46 14 22 H 0.27 14.48 8.31 -92.71 -0.77 13.71 14 Total: -1.00 -59.71 215.77 3.96 -55.75 By element: Atomic # 1 Polarization: -3.26 SS G_CDS: 1.21 Total: -2.05 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 2.54 Total: -32.33 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -0.47 Total: -72.53 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 7.68 SS G_CDS: -1.34 Total: 6.34 kcal Total: -59.71 3.96 -55.75 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783362.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.469 kcal (2) G-P(sol) polarization free energy of solvation -59.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds