Wall clock time and date at job start Mon Mar 30 2020 02:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.34475 * 126.16530 * 2 1 4 4 C 1.30258 * 108.69574 * 180.27119 * 3 2 1 5 5 O 1.33968 * 108.76579 * 359.75019 * 4 3 2 6 6 C 1.34327 * 126.16205 * 179.84949 * 2 1 3 7 7 C 1.50703 * 126.44582 * 0.02562 * 6 2 1 8 8 H 1.09002 * 109.47152 * 14.71170 * 7 6 2 9 9 O 1.42898 * 109.47171 * 134.71386 * 7 6 2 10 10 C 1.50699 * 109.47227 * 254.71286 * 7 6 2 11 11 H 1.07999 * 120.00019 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00129 * 180.02562 * 10 7 6 13 13 N 1.31519 * 119.99723 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99900 * 179.97438 * 12 10 7 15 15 H 1.48495 * 109.47112 * 60.00201 * 14 12 10 16 16 H 1.48503 * 109.47000 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46939 * 299.99464 * 14 12 10 18 18 H 1.09002 * 109.46860 * 270.15238 * 1 2 3 19 19 H 1.09003 * 109.46911 * 30.14831 * 1 2 3 20 20 H 1.08999 * 109.46864 * 150.15138 * 1 2 3 21 21 H 1.08001 * 125.61545 * 179.73528 * 4 3 2 22 22 H 0.96698 * 113.99898 * 59.99612 * 9 7 6 23 23 H 0.97003 * 119.99231 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6946 -0.0058 5 8 3.5735 -0.6447 -0.0042 6 6 2.2997 -1.0845 0.0028 7 6 1.8492 -2.5226 0.0061 8 1 0.7922 -2.5729 -0.2552 9 8 2.6118 -3.2628 -0.9493 10 6 2.0561 -3.1107 1.3781 11 1 2.4725 -2.5040 2.1685 12 6 1.7147 -4.4237 1.6239 13 7 1.2080 -5.1628 0.6612 14 14 1.9717 -5.1529 3.3245 15 1 1.1793 -4.3842 4.3176 16 1 1.5277 -6.5700 3.3277 17 1 3.4119 -5.0841 3.6799 18 1 -0.3633 0.0027 1.0277 19 1 -0.3633 0.8887 -0.5162 20 1 -0.3633 -0.8913 -0.5115 21 1 4.4066 1.3433 -0.0114 22 1 3.5636 -3.2615 -0.7789 23 1 0.9682 -6.0866 0.8342 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259786615.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:08 Heat of formation + Delta-G solvation = -37.145164 kcal Electronic energy + Delta-G solvation = -11002.293030 eV Core-core repulsion = 8817.204329 eV Total energy + Delta-G solvation = -2185.088701 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.57422 -35.80831 -34.44013 -32.31540 -31.10029 -27.88627 -25.95858 -23.29822 -21.18049 -20.04397 -17.27341 -16.59751 -15.69262 -14.98949 -14.74718 -14.22459 -13.21410 -12.87969 -12.66351 -12.14069 -11.73075 -11.39323 -11.14575 -10.98221 -10.39374 -10.29961 -10.22097 -9.51877 -8.79389 -8.59597 -7.81688 -6.18115 -4.38906 2.26747 3.22686 3.27339 3.28540 3.34507 3.56784 4.28476 4.75281 5.08760 5.56582 5.67806 6.01532 6.15652 6.23215 6.34334 6.50315 6.73980 7.01992 7.36402 7.66377 7.86048 8.38903 8.61501 9.10498 9.36578 10.85126 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.052419 B = 0.013042 C = 0.013006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.030564 B = 2146.324168 C = 2152.314814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.056 4.056 3 N -0.486 5.486 4 C 0.126 3.874 5 O -0.201 6.201 6 C -0.009 4.009 7 C 0.305 3.695 8 H 0.094 0.906 9 O -0.557 6.557 10 C -0.573 4.573 11 H 0.059 0.941 12 C 0.083 3.917 13 N -0.857 5.857 14 Si 0.899 3.101 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.274 1.274 18 H 0.068 0.932 19 H 0.063 0.937 20 H 0.074 0.926 21 H 0.238 0.762 22 H 0.355 0.645 23 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.912 6.076 -0.208 6.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.174 4.174 3 N -0.217 5.217 4 C -0.100 4.100 5 O -0.087 6.087 6 C -0.063 4.063 7 C 0.247 3.753 8 H 0.112 0.888 9 O -0.359 6.359 10 C -0.610 4.610 11 H 0.077 0.923 12 C -0.125 4.125 13 N -0.491 5.491 14 Si 0.726 3.274 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.199 1.199 18 H 0.087 0.913 19 H 0.082 0.918 20 H 0.093 0.907 21 H 0.254 0.746 22 H 0.199 0.801 23 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.078 6.383 -0.534 6.495 hybrid contribution 1.047 -0.741 1.280 1.812 sum 2.125 5.642 0.746 6.075 Atomic orbital electron populations 1.19984 0.87097 1.02331 1.02365 1.21357 0.97806 0.87612 1.10672 1.70153 1.01529 1.32327 1.17684 1.27656 0.97212 0.80327 1.04810 1.84428 1.31136 1.23779 1.69326 1.25703 0.79694 1.00993 0.99942 1.18371 0.92395 0.74818 0.89714 0.88837 1.86578 1.20973 1.75158 1.53213 1.21424 1.46520 0.97329 0.95728 0.92280 1.25017 0.93524 0.96719 0.97208 1.70047 1.39222 1.08125 1.31752 0.86551 0.78915 0.78092 0.83840 1.19899 1.20915 1.19949 0.91314 0.91819 0.90744 0.74584 0.80086 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.17 36.01 0.37 -0.72 14 2 C -0.06 -1.18 7.11 -82.81 -0.59 -1.77 14 3 N -0.49 -9.75 11.29 -11.17 -0.13 -9.88 14 4 C 0.13 2.22 13.23 52.09 0.69 2.91 14 5 O -0.20 -4.22 10.78 5.31 0.06 -4.17 14 6 C -0.01 -0.21 6.17 -35.69 -0.22 -0.43 14 7 C 0.31 7.76 3.22 -29.03 -0.09 7.67 14 8 H 0.09 2.46 6.84 -51.93 -0.35 2.11 14 9 O -0.56 -14.34 12.72 -35.27 -0.45 -14.79 14 10 C -0.57 -15.58 8.75 -34.44 -0.30 -15.88 14 11 H 0.06 1.62 7.74 -52.49 -0.41 1.21 14 12 C 0.08 2.24 5.40 -17.82 -0.10 2.15 14 13 N -0.86 -24.30 12.84 55.43 0.71 -23.59 14 14 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 14 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 14 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 14 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 14 18 H 0.07 1.17 8.14 -51.93 -0.42 0.75 14 19 H 0.06 1.01 8.14 -51.93 -0.42 0.58 14 20 H 0.07 1.30 7.03 -51.93 -0.36 0.94 14 21 H 0.24 2.72 8.06 -52.49 -0.42 2.30 14 22 H 0.35 8.20 9.03 45.56 0.41 8.62 14 23 H 0.27 7.12 8.31 -40.82 -0.34 6.78 14 LS Contribution 215.82 15.07 3.25 3.25 Total: -1.00 -31.03 215.82 -2.94 -33.97 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -1.12 Total: 5.57 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.24 Total: -6.07 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.59 Total: -33.47 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.39 Total: -18.96 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -31.03 -2.94 -33.97 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786615.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.178 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds