Wall clock time and date at job start Mon Mar 30 2020 02:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76204 * 103.00125 * 2 1 4 4 C 1.40305 * 126.58419 * 359.97438 * 3 2 1 5 5 C 1.35376 * 108.13494 * 180.02562 * 4 3 2 6 6 N 1.36537 * 109.34807 * 0.02562 * 5 4 3 7 7 H 0.96992 * 125.69541 * 179.97438 * 6 5 4 8 8 C 1.38302 * 108.61396 * 359.97438 * 6 5 4 9 9 C 1.39655 * 126.46306 * 180.02562 * 8 6 5 10 10 H 1.07991 * 120.00153 * 179.97438 * 9 8 6 11 11 C 1.39908 * 119.99531 * 359.95986 * 9 8 6 12 12 N 1.31041 * 119.99932 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99743 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47254 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47259 * 119.99881 * 13 11 9 16 16 H 1.48508 * 109.47196 * 240.00056 * 13 11 9 17 17 H 1.09003 * 109.47436 * 60.00061 * 1 2 3 18 18 H 1.08999 * 109.47126 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.47333 * 299.99796 * 1 2 3 20 20 H 1.07999 * 125.93394 * 359.76225 * 4 3 2 21 21 H 1.07999 * 125.32548 * 179.97438 * 5 4 3 22 22 H 0.97009 * 119.99444 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.3007 2.7851 -0.0005 5 6 2.0071 3.9400 -0.0009 6 7 3.3421 3.6537 -0.0012 7 1 4.0606 4.3053 -0.0019 8 6 3.4989 2.2796 -0.0005 9 6 4.7090 1.5824 0.0000 10 1 4.7099 0.5025 0.0010 11 6 5.9200 2.2831 -0.0012 12 7 5.9187 3.5935 -0.0032 13 14 7.5385 1.3505 0.0002 14 1 7.2685 -0.1098 0.0031 15 1 8.3168 1.7080 -1.2129 16 1 8.3170 1.7118 1.2121 17 1 -0.3634 0.5138 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 0.2240 2.7008 -0.0046 21 1 1.5812 4.9325 -0.0017 22 1 6.7584 4.0792 -0.0036 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259804443.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:07 Heat of formation + Delta-G solvation = 21.144946 kcal Electronic energy + Delta-G solvation = -8895.315649 eV Core-core repulsion = 7155.507468 eV Total energy + Delta-G solvation = -1739.808181 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.79682 -33.49672 -29.32341 -28.79826 -27.81432 -24.46111 -19.67774 -18.87263 -18.10869 -15.56453 -14.57714 -14.46393 -13.04221 -12.97358 -12.67496 -12.30784 -12.15372 -11.55433 -11.39788 -11.27372 -10.86240 -10.36905 -10.05316 -9.42180 -9.01344 -8.24891 -7.12846 -6.92966 -6.05121 -4.19775 2.91926 2.93479 3.07023 3.15512 3.82630 3.92236 4.07544 4.19058 5.32951 5.35091 5.79258 5.81819 6.30611 6.52638 6.73494 7.16612 7.39115 7.52242 7.96924 8.09705 8.70517 8.71604 9.06609 9.66267 10.15400 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.050585 B = 0.014988 C = 0.011635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.387962 B = 1867.680796 C = 2405.924216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.133 6.133 3 C -0.320 4.320 4 C -0.172 4.172 5 C -0.104 4.104 6 N -0.557 5.557 7 H 0.421 0.579 8 C 0.269 3.731 9 C -0.433 4.433 10 H 0.095 0.905 11 C 0.065 3.935 12 N -0.853 5.853 13 Si 0.931 3.069 14 H -0.259 1.259 15 H -0.274 1.274 16 H -0.274 1.274 17 H 0.066 0.934 18 H 0.084 0.916 19 H 0.066 0.934 20 H 0.101 0.899 21 H 0.130 0.870 22 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 -1.796 0.000 3.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.100 5.900 3 C -0.435 4.435 4 C -0.201 4.201 5 C -0.233 4.233 6 N -0.166 5.166 7 H 0.268 0.732 8 C 0.149 3.851 9 C -0.469 4.469 10 H 0.113 0.887 11 C -0.147 4.147 12 N -0.486 5.486 13 Si 0.755 3.245 14 H -0.182 1.182 15 H -0.200 1.200 16 H -0.200 1.200 17 H 0.085 0.915 18 H 0.103 0.897 19 H 0.085 0.915 20 H 0.119 0.881 21 H 0.147 0.853 22 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.603 -2.416 -0.001 2.899 hybrid contribution 0.030 1.333 -0.001 1.333 sum -1.573 -1.083 -0.002 1.909 Atomic orbital electron populations 1.23295 0.98539 1.04269 1.04058 1.84219 1.02249 1.07117 1.96404 1.20719 0.95251 0.92603 1.34966 1.19983 0.95926 0.92105 1.12092 1.21093 0.84651 0.97166 1.20432 1.42956 1.06239 1.07445 1.59935 0.73198 1.17645 0.91665 0.81063 0.94745 1.18811 0.88248 0.95156 1.44678 0.88680 1.25953 1.01890 0.94851 0.92036 1.68915 1.29657 1.07648 1.42373 0.85862 0.79641 0.80634 0.78313 1.18203 1.19976 1.19979 0.91509 0.89679 0.91511 0.88100 0.85271 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.72 101.05 0.98 -1.34 14 2 S -0.13 -3.01 22.39 -107.50 -2.41 -5.42 14 3 C -0.32 -8.43 6.50 -37.91 -0.25 -8.67 14 4 C -0.17 -4.19 10.10 -39.83 -0.40 -4.59 14 5 C -0.10 -2.52 11.88 -16.48 -0.20 -2.71 14 6 N -0.56 -14.62 5.79 -10.20 -0.06 -14.67 14 7 H 0.42 10.81 6.28 -40.82 -0.26 10.55 14 8 C 0.27 7.50 6.74 -83.52 -0.56 6.94 14 9 C -0.43 -11.88 9.13 -38.43 -0.35 -12.23 14 10 H 0.10 2.58 7.66 -52.49 -0.40 2.17 14 11 C 0.06 1.63 5.50 -17.26 -0.09 1.54 14 12 N -0.85 -21.54 10.69 55.55 0.59 -20.95 14 13 Si 0.93 19.21 29.56 -169.99 -5.03 14.19 14 14 H -0.26 -5.32 7.11 56.52 0.40 -4.92 14 15 H -0.27 -5.55 7.11 56.52 0.40 -5.15 14 16 H -0.27 -5.55 7.11 56.52 0.40 -5.15 14 17 H 0.07 1.14 8.14 -51.92 -0.42 0.71 14 18 H 0.08 1.24 8.14 -51.92 -0.42 0.81 14 19 H 0.07 1.14 8.14 -51.92 -0.42 0.71 14 20 H 0.10 2.19 7.58 -52.49 -0.40 1.80 14 21 H 0.13 2.64 8.06 -52.49 -0.42 2.22 14 22 H 0.28 6.54 8.30 -40.82 -0.34 6.20 14 LS Contribution 211.63 15.07 3.19 3.19 Total: -1.00 -28.30 211.63 -6.46 -34.76 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -1.88 Total: 9.97 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -0.87 Total: -21.07 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.53 Total: -35.62 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.41 Total: -5.42 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -28.30 -6.46 -34.76 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259804443.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.906 kcal (2) G-P(sol) polarization free energy of solvation -28.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds