Wall clock time and date at job start Mon Mar 30 2020 02:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76204 * 103.00125 * 2 1 4 4 C 1.40305 * 126.58419 * 359.97438 * 3 2 1 5 5 C 1.35376 * 108.13494 * 180.02562 * 4 3 2 6 6 N 1.36537 * 109.34807 * 0.02562 * 5 4 3 7 7 H 0.96992 * 125.69541 * 179.97438 * 6 5 4 8 8 C 1.38302 * 108.61396 * 359.97438 * 6 5 4 9 9 C 1.39655 * 126.46306 * 180.02562 * 8 6 5 10 10 H 1.07991 * 120.00153 * 179.97438 * 9 8 6 11 11 C 1.39908 * 119.99531 * 359.95986 * 9 8 6 12 12 N 1.31041 * 119.99932 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99743 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47254 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47259 * 119.99881 * 13 11 9 16 16 H 1.48508 * 109.47196 * 240.00056 * 13 11 9 17 17 H 1.09003 * 109.47436 * 60.00061 * 1 2 3 18 18 H 1.08999 * 109.47126 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.47333 * 299.99796 * 1 2 3 20 20 H 1.07999 * 125.93394 * 359.76225 * 4 3 2 21 21 H 1.07999 * 125.32548 * 179.97438 * 5 4 3 22 22 H 0.97009 * 119.99444 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.3007 2.7851 -0.0005 5 6 2.0071 3.9400 -0.0009 6 7 3.3421 3.6537 -0.0012 7 1 4.0606 4.3053 -0.0019 8 6 3.4989 2.2796 -0.0005 9 6 4.7090 1.5824 0.0000 10 1 4.7099 0.5025 0.0010 11 6 5.9200 2.2831 -0.0012 12 7 5.9187 3.5935 -0.0032 13 14 7.5385 1.3505 0.0002 14 1 7.2685 -0.1098 0.0031 15 1 8.3168 1.7080 -1.2129 16 1 8.3170 1.7118 1.2121 17 1 -0.3634 0.5138 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 0.2240 2.7008 -0.0046 21 1 1.5812 4.9325 -0.0017 22 1 6.7584 4.0792 -0.0036 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259804443.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:07 Heat of formation + Delta-G solvation = 4.237318 kcal Electronic energy + Delta-G solvation = -8896.048819 eV Core-core repulsion = 7155.507468 eV Total energy + Delta-G solvation = -1740.541351 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.72783 -35.42221 -31.19475 -30.72500 -29.32954 -26.40005 -21.60548 -20.77320 -20.04910 -17.50150 -16.32196 -16.24416 -14.62120 -14.61601 -14.48936 -14.03315 -13.99486 -13.36227 -13.03466 -12.93022 -12.60800 -12.30824 -11.82399 -11.26450 -10.72908 -10.13488 -9.07550 -8.81559 -7.92217 -6.16183 1.24489 1.32936 1.38981 1.55256 1.94668 2.20642 2.29590 2.30245 3.31754 3.43483 4.45226 4.49829 4.72330 4.87012 4.96319 5.25419 5.42517 5.60048 6.01473 6.13277 6.74037 6.80045 7.08293 7.69609 8.28226 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.050585 B = 0.014988 C = 0.011635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.387962 B = 1867.680796 C = 2405.924216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.170 6.170 3 C -0.342 4.342 4 C -0.183 4.183 5 C -0.107 4.107 6 N -0.565 5.565 7 H 0.419 0.581 8 C 0.225 3.775 9 C -0.469 4.469 10 H 0.085 0.915 11 C 0.026 3.974 12 N -0.870 5.870 13 Si 1.002 2.998 14 H -0.261 1.261 15 H -0.264 1.264 16 H -0.264 1.264 17 H 0.073 0.927 18 H 0.119 0.881 19 H 0.073 0.927 20 H 0.127 0.873 21 H 0.165 0.835 22 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.737 -1.947 -0.001 3.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S 0.063 5.937 3 C -0.457 4.457 4 C -0.212 4.212 5 C -0.235 4.235 6 N -0.174 5.174 7 H 0.266 0.734 8 C 0.106 3.894 9 C -0.504 4.504 10 H 0.103 0.897 11 C -0.183 4.183 12 N -0.503 5.503 13 Si 0.822 3.178 14 H -0.185 1.185 15 H -0.188 1.188 16 H -0.188 1.188 17 H 0.092 0.908 18 H 0.137 0.863 19 H 0.092 0.908 20 H 0.145 0.855 21 H 0.182 0.818 22 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.883 -2.549 -0.002 3.169 hybrid contribution 0.005 1.412 0.000 1.412 sum -1.878 -1.136 -0.002 2.195 Atomic orbital electron populations 1.23360 0.93660 1.06741 1.04661 1.84180 1.07592 1.05500 1.96438 1.21196 0.95353 0.94636 1.34485 1.20343 0.97162 0.91692 1.12004 1.21749 0.83890 0.98923 1.18965 1.43060 1.07109 1.07050 1.60206 0.73426 1.18136 0.92838 0.82047 0.96415 1.18954 0.89533 0.94972 1.46975 0.89702 1.26816 1.04814 0.95767 0.90941 1.68921 1.31115 1.08608 1.41620 0.84823 0.75109 0.78901 0.78920 1.18516 1.18824 1.18831 0.90835 0.86272 0.90840 0.85496 0.81757 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.73 9.72 113.37 1.10 -2.63 14 2 S -0.17 -7.62 22.39 -56.49 -1.27 -8.89 14 3 C -0.34 -18.01 6.50 23.35 0.15 -17.86 14 4 C -0.18 -8.72 10.10 22.11 0.22 -8.50 14 5 C -0.11 -5.02 11.88 83.30 0.99 -4.03 14 6 N -0.57 -29.82 5.79 -186.20 -1.08 -30.90 14 7 H 0.42 21.70 6.28 -92.71 -0.58 21.12 14 8 C 0.23 12.78 6.74 39.04 0.26 13.05 14 9 C -0.47 -26.30 9.13 23.02 0.21 -26.09 14 10 H 0.08 4.76 7.66 -2.92 -0.02 4.74 14 11 C 0.03 1.34 5.50 85.22 0.47 1.81 14 12 N -0.87 -43.91 10.69 21.84 0.23 -43.68 14 13 Si 1.00 39.12 29.56 68.60 2.03 41.15 14 14 H -0.26 -10.23 7.11 99.48 0.71 -9.52 14 15 H -0.26 -9.77 7.11 99.48 0.71 -9.07 14 16 H -0.26 -9.78 7.11 99.48 0.71 -9.07 14 17 H 0.07 2.29 8.14 -2.39 -0.02 2.28 14 18 H 0.12 3.03 8.14 -2.39 -0.02 3.01 14 19 H 0.07 2.29 8.14 -2.39 -0.02 2.27 14 20 H 0.13 5.22 7.58 -2.91 -0.02 5.20 14 21 H 0.17 6.34 8.06 -2.91 -0.02 6.31 14 22 H 0.30 13.36 8.30 -92.70 -0.77 12.59 14 Total: -1.00 -60.68 211.63 3.97 -56.71 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.64 Total: 29.87 kcal Atomic # 6 Polarization: -47.67 SS G_CDS: 3.41 Total: -44.26 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -0.84 Total: -74.58 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -1.27 Total: -8.89 kcal Total: -60.68 3.97 -56.71 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259804443.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.946 kcal (2) G-P(sol) polarization free energy of solvation -60.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds