Wall clock time and date at job start Mon Mar 30 2020 02:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46837 * 2 1 4 4 S 1.72002 * 127.33919 * 269.68575 * 3 2 1 5 5 N 1.69431 * 96.17127 * 179.97438 * 4 3 2 6 6 C 1.29327 * 108.14368 * 0.33297 * 5 4 3 7 7 C 1.39055 * 127.34117 * 90.00039 * 3 2 1 8 8 C 1.41484 * 123.28120 * 359.97438 * 7 3 2 9 9 H 1.08002 * 120.00143 * 338.83908 * 8 7 3 10 10 C 1.39710 * 120.00025 * 158.83140 * 8 7 3 11 11 N 1.31032 * 119.99962 * 344.73971 * 10 8 7 12 12 Si 1.86798 * 119.99693 * 164.73600 * 10 8 7 13 13 H 1.48506 * 109.46967 * 94.77632 * 12 10 8 14 14 H 1.48504 * 109.46897 * 214.77025 * 12 10 8 15 15 H 1.48497 * 109.47575 * 334.77412 * 12 10 8 16 16 H 1.08993 * 109.47600 * 60.00157 * 1 2 3 17 17 H 1.09000 * 109.47195 * 180.02562 * 1 2 3 18 18 H 1.09001 * 109.47260 * 299.99638 * 1 2 3 19 19 H 1.08995 * 109.47415 * 119.99329 * 2 1 3 20 20 H 1.09001 * 109.47260 * 240.00362 * 2 1 3 21 21 H 1.07998 * 121.54066 * 179.72816 * 6 5 4 22 22 H 0.96996 * 119.99828 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.3870 2.4020 -1.3675 5 7 2.8650 3.7707 -0.4906 6 6 2.7678 3.4959 0.7694 7 6 2.3134 2.2161 1.1055 8 6 2.1564 1.7737 2.4402 9 1 1.5038 0.9417 2.6602 10 6 2.8458 2.4129 3.4737 11 7 3.8499 3.2083 3.1976 12 14 2.3361 2.1337 5.2490 13 1 3.1645 1.0506 5.8373 14 1 2.5347 3.3850 6.0236 15 1 0.9041 1.7434 5.2974 16 1 -0.3634 0.5138 -0.8899 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3634 0.5138 0.8900 19 1 1.8934 -0.5137 0.8900 20 1 1.8934 -0.5138 -0.8900 21 1 3.0254 4.2210 1.5272 22 1 4.3283 3.6523 3.9151 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259804447.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:42 Heat of formation + Delta-G solvation = 8.547346 kcal Electronic energy + Delta-G solvation = -8970.264919 eV Core-core repulsion = 7229.910465 eV Total energy + Delta-G solvation = -1740.354454 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.31277 -33.37599 -33.05864 -29.01176 -25.66940 -23.12174 -21.24340 -18.99381 -16.82363 -15.61437 -15.09012 -13.87062 -13.38691 -13.05342 -12.39180 -12.15992 -11.51277 -11.40148 -11.29520 -11.07333 -10.50471 -10.39158 -10.31282 -9.53156 -9.22698 -8.87007 -7.81515 -7.27565 -6.89170 -4.39583 2.31651 2.96156 3.03344 3.09038 3.31416 3.57513 3.90152 3.98913 5.14758 5.90679 5.96907 6.24855 6.47793 6.56489 6.83234 6.99180 7.02144 7.08312 7.23651 7.62098 7.98460 8.25875 8.66397 8.76594 10.10430 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.046383 B = 0.016497 C = 0.012709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.524731 B = 1696.911049 C = 2202.622106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.003 4.003 3 C -0.351 4.351 4 S 0.084 5.916 5 N -0.487 5.487 6 C 0.119 3.881 7 C 0.035 3.965 8 C -0.424 4.424 9 H 0.083 0.917 10 C 0.070 3.930 11 N -0.812 5.812 12 Si 0.916 3.084 13 H -0.270 1.270 14 H -0.275 1.275 15 H -0.260 1.260 16 H 0.045 0.955 17 H 0.040 0.960 18 H 0.054 0.946 19 H 0.064 0.936 20 H 0.046 0.954 21 H 0.183 0.817 22 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 -2.899 0.580 4.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.043 4.043 3 C -0.479 4.479 4 S 0.233 5.767 5 N -0.302 5.302 6 C -0.087 4.087 7 C 0.022 3.978 8 C -0.459 4.459 9 H 0.101 0.899 10 C -0.146 4.146 11 N -0.440 5.440 12 Si 0.741 3.259 13 H -0.195 1.195 14 H -0.200 1.200 15 H -0.184 1.184 16 H 0.064 0.936 17 H 0.059 0.941 18 H 0.073 0.927 19 H 0.083 0.917 20 H 0.065 0.935 21 H 0.200 0.800 22 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.616 -1.932 -1.398 3.540 hybrid contribution -0.235 -0.556 2.711 2.778 sum -2.851 -2.488 1.313 4.005 Atomic orbital electron populations 1.21774 0.96942 0.99586 1.01666 1.19261 0.93836 0.90881 1.00356 1.24297 1.27465 1.01233 0.94859 1.82723 1.68774 1.07045 1.18181 1.76206 1.24676 1.20200 1.09156 1.23529 0.95108 0.97988 0.92038 1.17990 0.95035 0.90260 0.94543 1.19074 1.23106 1.14358 0.89323 0.89888 1.25949 0.93092 0.93445 1.02105 1.69754 1.14809 1.23959 1.35505 0.86152 0.80261 0.78690 0.80818 1.19532 1.20014 1.18412 0.93581 0.94063 0.92670 0.91702 0.93524 0.80047 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.89 37.16 0.37 -2.18 14 2 C 0.00 -0.07 6.17 -27.88 -0.17 -0.24 14 3 C -0.35 -8.54 5.96 -34.00 -0.20 -8.74 14 4 S 0.08 1.99 23.68 -107.50 -2.55 -0.56 14 5 N -0.49 -12.63 11.99 29.61 0.35 -12.27 14 6 C 0.12 3.13 10.03 -17.98 -0.18 2.94 14 7 C 0.04 0.93 5.57 -107.73 -0.60 0.33 14 8 C -0.42 -10.81 8.78 -37.80 -0.33 -11.14 14 9 H 0.08 2.04 7.57 -52.49 -0.40 1.64 14 10 C 0.07 1.69 5.31 -17.34 -0.09 1.60 14 11 N -0.81 -20.22 10.88 55.54 0.60 -19.62 14 12 Si 0.92 18.04 29.59 -169.99 -5.03 13.02 14 13 H -0.27 -5.28 7.11 56.52 0.40 -4.88 14 14 H -0.28 -5.31 7.11 56.52 0.40 -4.91 14 15 H -0.26 -5.08 7.11 56.52 0.40 -4.68 14 16 H 0.05 0.81 8.14 -51.93 -0.42 0.39 14 17 H 0.04 0.62 8.14 -51.93 -0.42 0.20 14 18 H 0.05 1.04 8.14 -51.93 -0.42 0.62 14 19 H 0.06 1.34 7.69 -51.93 -0.40 0.94 14 20 H 0.05 0.88 8.14 -51.93 -0.42 0.46 14 21 H 0.18 4.76 6.23 -52.49 -0.33 4.43 14 22 H 0.28 6.41 8.30 -40.82 -0.34 6.07 14 LS Contribution 211.51 15.07 3.19 3.19 Total: -1.00 -26.80 211.51 -6.59 -33.38 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -1.95 Total: 0.28 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -1.21 Total: -17.43 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.96 Total: -31.89 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.55 Total: -0.56 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -26.80 -6.59 -33.38 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259804447.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.932 kcal (2) G-P(sol) polarization free energy of solvation -26.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds