Wall clock time and date at job start Mon Mar 30 2020 02:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 7 12 12 C 1.37813 * 121.55624 * 124.99921 * 11 10 9 13 13 C 1.35140 * 114.75956 * 180.02562 * 12 11 10 14 14 S 1.72057 * 105.50179 * 0.02562 * 13 12 11 15 15 N 1.30082 * 121.56177 * 304.71841 * 11 10 9 16 16 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 18 18 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 19 19 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 20 20 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 21 21 H 1.07994 * 122.62566 * 0.02562 * 12 11 10 22 22 H 1.07997 * 127.25086 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4917 -4.9671 -0.0020 12 6 1.7148 -5.9284 -0.9640 13 6 0.9640 -7.0444 -0.8338 14 16 -0.0125 -6.7819 0.5583 15 7 0.6042 -5.2413 0.9086 16 1 -0.4849 0.8401 0.0004 17 1 0.6240 -2.5575 0.8880 18 1 0.6246 -2.5563 -0.8919 19 1 2.8725 -3.6039 -0.8910 20 1 2.8713 -3.6047 0.8890 21 1 2.4335 -5.7999 -1.7598 22 1 0.9740 -7.9170 -1.4701 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259810270.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:10 Heat of formation + Delta-G solvation = 2.432990 kcal Electronic energy + Delta-G solvation = -8610.405042 eV Core-core repulsion = 6869.785449 eV Total energy + Delta-G solvation = -1740.619592 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.05176 -35.61703 -33.15361 -31.78304 -28.09032 -24.99742 -22.54359 -20.34975 -19.00951 -18.45014 -16.55800 -16.25348 -15.44162 -14.86372 -14.36979 -14.06621 -13.86134 -13.07094 -12.83790 -12.49012 -12.29743 -11.85861 -11.66932 -11.37437 -11.08677 -10.62098 -10.53908 -9.48381 -8.19508 -6.32308 -0.13078 0.71214 0.96120 1.41377 1.43836 1.54601 1.59649 2.42054 3.13798 3.79444 4.24837 4.47107 4.56395 4.71571 4.79350 4.97144 5.19988 5.48050 5.59418 5.82618 5.92576 6.19688 6.85119 7.37413 8.92767 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.102827 B = 0.008625 C = 0.008249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.237553 B = 3245.640375 C = 3393.654526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.038 3.962 10 C -0.038 4.038 11 C 0.115 3.885 12 C -0.209 4.209 13 C -0.177 4.177 14 S 0.217 5.783 15 N -0.506 5.506 16 H 0.263 0.737 17 H -0.013 1.013 18 H -0.014 1.014 19 H 0.096 0.904 20 H 0.073 0.927 21 H 0.183 0.817 22 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 -12.967 -3.075 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.089 0.911 9 C 0.000 4.000 10 C -0.080 4.080 11 C -0.063 4.063 12 C -0.243 4.243 13 C -0.325 4.325 14 S 0.370 5.630 15 N -0.327 5.327 16 H 0.071 0.929 17 H 0.005 0.995 18 H 0.004 0.996 19 H 0.115 0.885 20 H 0.092 0.908 21 H 0.201 0.799 22 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.383 -13.070 -1.392 13.358 hybrid contribution 1.107 1.279 -1.176 2.060 sum 3.489 -11.791 -2.568 12.562 Atomic orbital electron populations 1.70149 1.08127 1.27778 1.51624 1.26082 0.95758 1.03752 0.94623 0.85350 0.78588 0.77879 0.78626 1.19419 1.21104 1.18369 1.21708 0.93903 0.91843 1.50643 0.91118 1.18856 0.93984 0.92554 0.94607 1.20449 0.96896 0.87493 1.03176 1.22169 0.94043 0.98755 0.91286 1.21571 1.06442 0.93109 1.03168 1.27012 0.99013 1.03548 1.02902 1.83761 1.42646 1.14117 1.22442 1.76735 1.17532 1.10407 1.28051 0.92851 0.99462 0.99578 0.88543 0.90845 0.79933 0.75621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.05 13.29 21.45 0.28 -58.76 14 2 C 0.00 -0.28 5.46 84.65 0.46 0.19 14 3 Si 0.97 44.71 29.54 68.60 2.03 46.74 14 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 14 5 H -0.29 -12.97 7.11 99.48 0.71 -12.27 14 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 14 7 C -0.54 -31.36 9.11 25.60 0.23 -31.12 14 8 H 0.07 3.79 7.74 -2.91 -0.02 3.77 14 9 C 0.04 2.11 4.86 29.85 0.14 2.25 14 10 C -0.04 -1.61 5.62 29.85 0.17 -1.45 14 11 C 0.11 4.39 6.08 42.72 0.26 4.65 14 12 C -0.21 -5.86 9.90 21.45 0.21 -5.65 14 13 C -0.18 -4.02 11.42 67.11 0.77 -3.26 14 14 S 0.22 6.41 23.72 -56.49 -1.34 5.07 14 15 N -0.51 -20.96 11.78 -52.59 -0.62 -21.58 14 16 H 0.26 15.52 8.31 -92.71 -0.77 14.75 14 17 H -0.01 -0.82 8.03 -2.39 -0.02 -0.84 14 18 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 14 19 H 0.10 3.53 8.01 -2.39 -0.02 3.51 14 20 H 0.07 3.05 8.14 -2.38 -0.02 3.03 14 21 H 0.18 3.96 8.06 -2.91 -0.02 3.94 14 22 H 0.23 2.82 8.06 -2.91 -0.02 2.80 14 Total: -1.00 -70.60 216.57 3.80 -66.79 By element: Atomic # 1 Polarization: -5.06 SS G_CDS: 1.20 Total: -3.86 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 2.25 Total: -34.39 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -0.33 Total: -80.34 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 6.41 SS G_CDS: -1.34 Total: 5.07 kcal Total: -70.60 3.80 -66.79 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810270.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.227 kcal (2) G-P(sol) polarization free energy of solvation -70.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds