Wall clock time and date at job start Mon Mar 30 2020 02:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35794 * 116.99942 * 2 1 4 4 C 1.39896 * 126.74037 * 0.02562 * 3 2 1 5 5 C 1.37638 * 107.13525 * 179.97438 * 4 3 2 6 6 N 1.37909 * 125.50007 * 179.97438 * 5 4 3 7 7 O 1.34485 * 108.98778 * 0.02562 * 5 4 3 8 8 C 1.35309 * 109.50207 * 359.75912 * 7 5 4 9 9 C 1.39522 * 126.06885 * 180.27398 * 8 7 5 10 10 H 1.07996 * 119.99690 * 180.13013 * 9 8 7 11 11 C 1.39826 * 120.00271 * 0.12853 * 9 8 7 12 12 N 1.31142 * 120.00149 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00184 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46886 * 89.99765 * 13 11 9 15 15 H 1.48499 * 109.47315 * 210.00093 * 13 11 9 16 16 H 1.48501 * 109.46937 * 329.99926 * 13 11 9 17 17 H 1.09001 * 109.46558 * 60.00298 * 1 2 3 18 18 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47187 * 300.00250 * 1 2 3 20 20 H 1.07998 * 126.43008 * 359.92739 * 4 3 2 21 21 H 0.96998 * 120.00291 * 359.97438 * 6 5 4 22 22 H 0.96999 * 119.99912 * 180.02562 * 6 5 4 23 23 H 0.97000 * 120.00075 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.4266 2.4645 0.0005 5 6 2.4267 3.4101 0.0009 6 7 2.2372 4.7761 0.0009 7 8 3.6183 2.7867 0.0001 8 6 3.4273 1.4472 0.0045 9 6 4.4278 0.4748 0.0106 10 1 4.1632 -0.5722 0.0116 11 6 5.7732 0.8559 0.0152 12 7 6.0946 2.1273 0.0144 13 14 7.1127 -0.4460 0.0241 14 1 7.4734 -0.7945 -1.3737 15 1 8.3098 0.0801 0.7278 16 1 6.6197 -1.6588 0.7251 17 1 -0.3632 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 0.3636 2.6552 -0.0001 21 1 1.3386 5.1412 0.0003 22 1 3.0027 5.3719 0.0008 23 1 7.0279 2.3916 0.0173 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259848284.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:35 Heat of formation + Delta-G solvation = -55.677360 kcal Electronic energy + Delta-G solvation = -10944.415503 eV Core-core repulsion = 8758.523186 eV Total energy + Delta-G solvation = -2185.892317 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.35331 -38.64504 -35.78560 -34.75522 -32.13477 -30.10080 -27.90484 -25.43363 -21.95363 -21.78887 -19.52142 -18.39799 -17.34463 -16.64753 -16.58110 -16.00600 -15.56779 -15.54269 -14.97411 -13.94389 -13.08538 -12.95077 -12.85090 -12.39589 -12.10893 -12.06584 -11.70971 -11.56204 -11.04038 -9.32462 -8.60780 -8.43119 -5.89912 1.25670 1.41154 1.57320 1.74398 2.19798 2.25061 2.35309 3.03120 3.29053 3.90673 4.56088 4.57536 4.64779 4.79960 5.08545 5.22627 5.38007 5.80126 5.96967 6.40933 6.60082 6.82423 6.94292 7.33739 7.53736 8.43999 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.040760 B = 0.015925 C = 0.011522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.777713 B = 1757.830051 C = 2429.459574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.331 6.331 3 C -0.154 4.154 4 C -0.307 4.307 5 C 0.165 3.835 6 N -0.830 5.830 7 O -0.177 6.177 8 C 0.119 3.881 9 C -0.468 4.468 10 H 0.098 0.902 11 C 0.016 3.984 12 N -0.839 5.839 13 Si 1.000 3.000 14 H -0.260 1.260 15 H -0.265 1.265 16 H -0.257 1.257 17 H 0.042 0.958 18 H 0.110 0.890 19 H 0.041 0.959 20 H 0.144 0.856 21 H 0.424 0.576 22 H 0.400 0.600 23 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.421 0.964 -0.003 4.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.247 6.247 3 C -0.200 4.200 4 C -0.333 4.333 5 C 0.016 3.984 6 N -0.385 5.385 7 O -0.074 6.074 8 C 0.068 3.932 9 C -0.500 4.500 10 H 0.116 0.884 11 C -0.196 4.196 12 N -0.469 5.469 13 Si 0.820 3.180 14 H -0.185 1.185 15 H -0.190 1.190 16 H -0.181 1.181 17 H 0.060 0.940 18 H 0.129 0.871 19 H 0.060 0.940 20 H 0.162 0.838 21 H 0.258 0.742 22 H 0.229 0.771 23 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.875 0.978 0.002 3.996 hybrid contribution 0.010 0.263 -0.009 0.263 sum -3.865 1.241 -0.007 4.059 Atomic orbital electron populations 1.22892 0.78817 1.03518 1.00243 1.85660 1.21037 1.25470 1.92521 1.18680 0.91099 0.84721 1.25501 1.20555 0.97806 0.90699 1.24256 1.18870 0.84074 0.86582 1.08923 1.40457 1.11147 0.98636 1.88310 1.84380 1.28592 1.19085 1.75295 1.18862 0.91604 0.78831 1.03896 1.18712 0.90030 0.92842 1.48383 0.88391 1.26956 1.01977 0.98799 0.91864 1.69969 1.20782 1.18337 1.37765 0.84923 0.75861 0.77662 0.79550 1.18510 1.18981 1.18053 0.93984 0.87145 0.93986 0.83811 0.74204 0.77128 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 10.22 113.37 1.16 2.61 14 2 O -0.33 -16.75 10.55 -91.24 -0.96 -17.71 14 3 C -0.15 -8.54 7.07 23.15 0.16 -8.38 14 4 C -0.31 -14.88 10.01 22.53 0.23 -14.65 14 5 C 0.17 8.10 8.47 83.59 0.71 8.81 14 6 N -0.83 -29.52 9.04 -166.35 -1.50 -31.02 14 7 O -0.18 -10.41 8.95 -14.48 -0.13 -10.54 14 8 C 0.12 7.28 6.80 23.06 0.16 7.43 14 9 C -0.47 -27.92 9.28 22.96 0.21 -27.71 14 10 H 0.10 5.69 7.84 -2.91 -0.02 5.67 14 11 C 0.02 0.89 5.50 85.18 0.47 1.36 14 12 N -0.84 -47.56 12.00 21.83 0.26 -47.30 14 13 Si 1.00 40.88 29.56 68.60 2.03 42.91 14 14 H -0.26 -10.16 7.11 99.48 0.71 -9.46 14 15 H -0.27 -10.17 7.11 99.48 0.71 -9.46 14 16 H -0.26 -10.18 7.11 99.48 0.71 -9.48 14 17 H 0.04 1.41 8.11 -2.39 -0.02 1.39 14 18 H 0.11 3.12 8.14 -2.39 -0.02 3.10 14 19 H 0.04 1.41 8.11 -2.39 -0.02 1.39 14 20 H 0.14 5.87 7.76 -2.91 -0.02 5.85 14 21 H 0.42 11.60 8.94 -92.71 -0.83 10.77 14 22 H 0.40 13.01 8.95 -92.71 -0.83 12.18 14 23 H 0.29 14.56 8.30 -92.71 -0.77 13.79 14 Total: -1.00 -70.81 214.93 2.38 -68.44 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.41 Total: 25.76 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 3.09 Total: -30.53 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -1.24 Total: -78.33 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -1.09 Total: -28.26 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -70.81 2.38 -68.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259848284.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.760 kcal (2) G-P(sol) polarization free energy of solvation -70.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds