Wall clock time and date at job start Mon Mar 30 2020 02:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35428 * 127.91091 * 2 1 4 4 C 1.50700 * 126.27645 * 359.97438 * 3 2 1 5 5 C 1.50702 * 109.46869 * 94.71581 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 O 1.33636 * 107.44948 * 179.72512 * 3 2 1 14 14 N 1.20967 * 112.12141 * 0.25780 * 13 3 2 15 15 H 0.97005 * 124.70565 * 179.97438 * 14 13 3 16 16 C 1.34854 * 110.59039 * 0.02562 * 14 13 3 17 17 O 1.22044 * 127.17281 * 180.02562 * 16 14 13 18 18 H 1.08994 * 109.47243 * 90.00070 * 1 2 3 19 19 H 1.09000 * 109.46656 * 210.00270 * 1 2 3 20 20 H 1.08997 * 109.46844 * 329.99834 * 1 2 3 21 21 H 1.09004 * 109.47210 * 334.71874 * 4 3 2 22 22 H 1.08994 * 109.47551 * 214.71526 * 4 3 2 23 23 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3391 1.0685 0.0000 4 6 1.9285 2.5185 -0.0005 5 6 1.9035 3.0339 1.4154 6 1 2.1598 2.3774 2.2337 7 6 1.5595 4.3455 1.6655 8 7 1.2478 5.1451 0.6690 9 14 1.5360 4.9865 3.4199 10 1 1.9235 3.8962 4.3506 11 1 2.4968 6.1116 3.5488 12 1 0.1696 5.4617 3.7551 13 8 3.5911 0.6013 0.0061 14 7 3.6262 -0.6078 0.0048 15 1 4.4393 -1.1368 0.0081 16 6 2.3781 -1.1185 -0.0031 17 8 2.0638 -2.2978 -0.0060 18 1 -0.3633 0.0000 -1.0276 19 1 -0.3632 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5139 21 1 0.9355 2.6147 -0.4398 22 1 2.6423 3.0981 -0.5857 23 1 1.0054 6.0677 0.8450 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259874629.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:17 Heat of formation + Delta-G solvation = 16.754840 kcal Electronic energy + Delta-G solvation = -10856.463095 eV Core-core repulsion = 8673.711673 eV Total energy + Delta-G solvation = -2182.751421 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.40788 -37.48836 -34.66540 -32.69797 -31.50488 -28.88266 -27.20338 -23.86104 -21.44792 -20.18811 -18.58553 -17.47818 -16.37091 -15.24855 -14.71939 -14.37205 -13.27298 -12.97892 -12.63547 -12.49557 -12.22276 -11.59528 -11.51275 -10.99619 -10.87496 -10.24099 -9.84531 -9.35815 -8.88412 -8.65491 -7.77843 -6.28857 -4.35127 1.99206 2.74064 3.19337 3.27725 3.32459 3.45546 4.14247 4.28628 5.08082 5.38560 5.67712 6.11159 6.29356 6.38467 6.54664 6.73104 6.88701 7.12007 7.16185 7.65568 7.90039 8.27193 8.67063 8.70505 9.30622 10.80975 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.061953 B = 0.011149 C = 0.010858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.849511 B = 2510.760881 C = 2578.041263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.339 4.339 3 C 0.144 3.856 4 C 0.082 3.918 5 C -0.525 4.525 6 H 0.063 0.937 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.904 3.096 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.280 1.280 13 O -0.014 6.014 14 N -0.567 5.567 15 H 0.450 0.550 16 C 0.489 3.511 17 O -0.557 6.557 18 H 0.055 0.945 19 H 0.059 0.941 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.049 0.951 23 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.286 -4.221 -0.923 4.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.344 4.344 3 C 0.089 3.911 4 C 0.045 3.955 5 C -0.563 4.563 6 H 0.082 0.918 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.731 3.269 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.206 1.206 13 O -0.026 6.026 14 N -0.259 5.259 15 H 0.301 0.699 16 C 0.289 3.711 17 O -0.442 6.442 18 H 0.074 0.926 19 H 0.078 0.922 20 H 0.094 0.906 21 H 0.086 0.914 22 H 0.067 0.933 23 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.279 -4.568 -0.968 5.196 hybrid contribution 0.471 0.149 0.907 1.033 sum 2.750 -4.419 -0.061 5.205 Atomic orbital electron populations 1.19752 0.87216 1.02494 1.01203 1.20970 0.98587 0.92060 1.22799 1.24906 0.78968 0.99491 0.87712 1.18363 0.98476 0.78992 0.99707 1.20913 1.48444 0.96204 0.90761 0.91834 1.24957 0.94500 0.96425 0.97928 1.69936 1.45007 1.06547 1.31056 0.86330 0.77915 0.78916 0.83726 1.19520 1.20719 1.20630 1.83985 1.30556 1.06634 1.81448 1.43475 1.11686 0.96187 1.74503 0.69931 1.18265 0.82135 0.90505 0.80176 1.90879 1.79030 1.17359 1.56886 0.92589 0.92246 0.90574 0.91363 0.93275 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.90 10.10 36.00 0.36 -0.54 14 2 C -0.34 -6.96 6.32 -104.28 -0.66 -7.62 14 3 C 0.14 3.02 6.62 -35.31 -0.23 2.78 14 4 C 0.08 1.90 5.32 -29.03 -0.15 1.75 14 5 C -0.53 -13.50 9.09 -34.44 -0.31 -13.82 14 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 14 7 C 0.07 1.69 5.46 -17.82 -0.10 1.60 14 8 N -0.89 -24.01 13.29 55.43 0.74 -23.27 14 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.15 14 10 H -0.27 -6.02 7.11 56.52 0.40 -5.61 14 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 14 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 14 13 O -0.01 -0.27 11.14 18.21 0.20 -0.07 14 14 N -0.57 -9.74 6.80 29.17 0.20 -9.54 14 15 H 0.45 5.79 8.96 -40.82 -0.37 5.42 14 16 C 0.49 10.04 8.47 -14.88 -0.13 9.91 14 17 O -0.56 -12.73 18.08 4.88 0.09 -12.65 14 18 H 0.06 0.92 8.14 -51.93 -0.42 0.50 14 19 H 0.06 1.04 8.14 -51.93 -0.42 0.62 14 20 H 0.08 1.40 7.91 -51.93 -0.41 0.99 14 21 H 0.07 1.60 7.77 -51.93 -0.40 1.20 14 22 H 0.05 1.17 8.14 -51.93 -0.42 0.74 14 23 H 0.27 6.81 8.31 -40.82 -0.34 6.47 14 LS Contribution 216.67 15.07 3.27 3.27 Total: -1.00 -29.36 216.67 -3.74 -33.10 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -1.99 Total: -0.05 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.22 Total: -5.94 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.93 Total: -32.81 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.29 Total: -12.71 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -29.36 -3.74 -33.10 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259874629.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.853 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds