Wall clock time and date at job start Mon Mar 30 2020 02:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35428 * 127.91091 * 2 1 4 4 C 1.50700 * 126.27645 * 359.97438 * 3 2 1 5 5 C 1.50702 * 109.46869 * 94.71581 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 O 1.33636 * 107.44948 * 179.72512 * 3 2 1 14 14 N 1.20967 * 112.12141 * 0.25780 * 13 3 2 15 15 H 0.97005 * 124.70565 * 179.97438 * 14 13 3 16 16 C 1.34854 * 110.59039 * 0.02562 * 14 13 3 17 17 O 1.22044 * 127.17281 * 180.02562 * 16 14 13 18 18 H 1.08994 * 109.47243 * 90.00070 * 1 2 3 19 19 H 1.09000 * 109.46656 * 210.00270 * 1 2 3 20 20 H 1.08997 * 109.46844 * 329.99834 * 1 2 3 21 21 H 1.09004 * 109.47210 * 334.71874 * 4 3 2 22 22 H 1.08994 * 109.47551 * 214.71526 * 4 3 2 23 23 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3391 1.0685 0.0000 4 6 1.9285 2.5185 -0.0005 5 6 1.9035 3.0339 1.4154 6 1 2.1598 2.3774 2.2337 7 6 1.5595 4.3455 1.6655 8 7 1.2478 5.1451 0.6690 9 14 1.5360 4.9865 3.4199 10 1 1.9235 3.8962 4.3506 11 1 2.4968 6.1116 3.5488 12 1 0.1696 5.4617 3.7551 13 8 3.5911 0.6013 0.0061 14 7 3.6262 -0.6078 0.0048 15 1 4.4393 -1.1368 0.0081 16 6 2.3781 -1.1185 -0.0031 17 8 2.0638 -2.2978 -0.0060 18 1 -0.3633 0.0000 -1.0276 19 1 -0.3632 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5139 21 1 0.9355 2.6147 -0.4398 22 1 2.6423 3.0981 -0.5857 23 1 1.0054 6.0677 0.8450 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259874629.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:16 Heat of formation + Delta-G solvation = -2.661413 kcal Electronic energy + Delta-G solvation = -10857.305047 eV Core-core repulsion = 8673.711673 eV Total energy + Delta-G solvation = -2183.593373 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.98180 -39.14667 -36.40602 -34.54573 -33.10259 -30.66856 -28.79536 -25.76103 -23.00046 -21.88176 -20.11678 -19.13804 -18.27034 -16.98791 -16.46488 -16.03069 -14.92390 -14.72169 -14.44037 -14.12489 -13.78782 -13.38973 -13.05322 -12.78635 -12.63421 -12.09686 -11.70788 -11.03825 -10.62335 -10.49700 -9.40424 -8.26218 -6.38766 0.34059 1.25733 1.44466 1.47687 1.58667 1.81870 2.41070 2.53972 3.09293 3.76855 4.02330 4.50150 4.77833 4.88727 5.05076 5.17563 5.25784 5.32457 5.53739 5.66153 5.96711 6.64456 6.68999 7.14483 7.30471 8.83785 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.061953 B = 0.011149 C = 0.010858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.849511 B = 2510.760881 C = 2578.041263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.340 4.340 3 C 0.134 3.866 4 C 0.090 3.910 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.917 5.917 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.277 1.277 12 H -0.276 1.276 13 O -0.005 6.005 14 N -0.544 5.544 15 H 0.471 0.529 16 C 0.482 3.518 17 O -0.582 6.582 18 H 0.074 0.926 19 H 0.065 0.935 20 H 0.071 0.929 21 H 0.062 0.938 22 H 0.039 0.961 23 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 -4.378 -0.370 5.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.345 4.345 3 C 0.078 3.922 4 C 0.053 3.947 5 C -0.577 4.577 6 H 0.076 0.924 7 C -0.179 4.179 8 N -0.556 5.556 9 Si 0.790 3.210 10 H -0.193 1.193 11 H -0.202 1.202 12 H -0.201 1.201 13 O -0.018 6.018 14 N -0.236 5.236 15 H 0.326 0.674 16 C 0.283 3.717 17 O -0.470 6.470 18 H 0.092 0.908 19 H 0.084 0.916 20 H 0.090 0.910 21 H 0.080 0.920 22 H 0.057 0.943 23 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.581 -4.738 -0.418 5.411 hybrid contribution 0.423 0.174 0.700 0.836 sum 3.005 -4.564 0.282 5.471 Atomic orbital electron populations 1.19830 0.85997 1.02527 1.02438 1.21343 0.99745 0.91900 1.21532 1.24433 0.79713 0.98673 0.89375 1.18079 0.97971 0.80258 0.98432 1.21165 1.48344 0.96474 0.91767 0.92425 1.25700 0.94107 0.96656 1.01479 1.70015 1.45758 1.06954 1.32861 0.85394 0.78037 0.78272 0.79342 1.19344 1.20225 1.20142 1.83981 1.29668 1.07221 1.80956 1.43420 1.11907 0.95508 1.72759 0.67434 1.18257 0.82972 0.90056 0.80457 1.90869 1.79637 1.18132 1.58313 0.90773 0.91616 0.91044 0.91975 0.94278 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.79 10.10 71.24 0.72 -1.07 14 2 C -0.34 -13.50 6.32 -19.64 -0.12 -13.62 14 3 C 0.13 5.45 6.62 25.04 0.17 5.61 14 4 C 0.09 4.16 5.32 29.10 0.15 4.31 14 5 C -0.54 -27.47 9.09 25.60 0.23 -27.23 14 6 H 0.06 2.94 7.74 -2.91 -0.02 2.92 14 7 C 0.02 1.08 5.46 84.66 0.46 1.54 14 8 N -0.92 -49.29 13.29 21.45 0.28 -49.01 14 9 Si 0.96 40.66 29.54 68.60 2.03 42.69 14 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 14 11 H -0.28 -11.39 7.11 99.48 0.71 -10.69 14 12 H -0.28 -11.37 7.11 99.48 0.71 -10.66 14 13 O -0.01 -0.20 11.14 75.31 0.84 0.64 14 14 N -0.54 -17.53 6.80 -179.68 -1.22 -18.76 14 15 H 0.47 10.93 8.96 -92.70 -0.83 10.10 14 16 C 0.48 18.99 8.47 85.10 0.72 19.71 14 17 O -0.58 -25.79 18.08 -5.46 -0.10 -25.88 14 18 H 0.07 2.32 8.14 -2.39 -0.02 2.30 14 19 H 0.06 2.21 8.14 -2.39 -0.02 2.19 14 20 H 0.07 2.56 7.91 -2.39 -0.02 2.55 14 21 H 0.06 2.92 7.77 -2.38 -0.02 2.91 14 22 H 0.04 1.86 8.14 -2.39 -0.02 1.84 14 23 H 0.27 13.66 8.31 -92.70 -0.77 12.89 14 Total: -1.00 -59.74 216.67 4.56 -55.18 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 0.40 Total: 5.89 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 2.33 Total: -10.75 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -0.94 Total: -67.77 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: 0.74 Total: -25.24 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -59.74 4.56 -55.18 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259874629.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.515 kcal (2) G-P(sol) polarization free energy of solvation -59.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds