Wall clock time and date at job start Mon Mar 30 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35457 * 126.77734 * 2 1 4 4 C 1.41381 * 103.98394 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.79764 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47358 * 5.00173 * 5 4 3 7 7 O 1.42903 * 109.47131 * 244.99813 * 5 4 3 8 8 C 1.50707 * 109.47163 * 125.00616 * 5 4 3 9 9 H 1.07995 * 119.99310 * 359.97438 * 8 5 4 10 10 C 1.37872 * 119.99931 * 179.97438 * 8 5 4 11 11 N 1.31515 * 120.00169 * 359.97438 * 10 8 5 12 12 Si 1.86805 * 119.99871 * 179.97438 * 10 8 5 13 13 H 1.48504 * 109.46985 * 89.99971 * 12 10 8 14 14 H 1.48502 * 109.47121 * 210.00067 * 12 10 8 15 15 H 1.48504 * 109.47079 * 330.00105 * 12 10 8 16 16 N 1.30176 * 106.39654 * 0.26410 * 4 3 2 17 17 O 1.20922 * 111.60163 * 359.53654 * 16 4 3 18 18 H 1.09001 * 109.47565 * 89.99587 * 1 2 3 19 19 H 1.08998 * 109.47192 * 209.99830 * 1 2 3 20 20 H 1.09004 * 109.46786 * 329.99749 * 1 2 3 21 21 H 1.08000 * 128.00383 * 0.02562 * 3 2 1 22 22 H 0.96700 * 114.00311 * 300.00591 * 7 5 4 23 23 H 0.96998 * 119.99752 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5372 0.0006 5 6 4.9210 1.3000 0.0014 6 1 4.7161 2.3668 0.0911 7 8 5.6207 1.0502 -1.2193 8 6 5.7662 0.8512 1.1656 9 1 5.3987 0.0900 1.8378 10 6 7.0085 1.4122 1.3724 11 7 7.4562 2.3388 0.5534 12 14 8.0559 0.8564 2.8159 13 1 8.9139 -0.2806 2.3960 14 1 8.9122 1.9820 3.2686 15 1 7.1741 0.4258 3.9305 16 7 3.4763 -0.7564 -0.0048 17 8 2.3094 -1.0736 0.0005 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 2.0344 2.1271 0.0004 22 1 5.8364 0.1190 -1.3656 23 1 8.3300 2.7337 0.6992 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259896689.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:21 Heat of formation + Delta-G solvation = 2.267717 kcal Electronic energy + Delta-G solvation = -10832.804746 eV Core-core repulsion = 8649.425115 eV Total energy + Delta-G solvation = -2183.379630 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -44.16089 -35.96704 -33.31131 -32.31631 -32.17585 -27.38141 -27.18649 -23.51451 -22.26506 -19.21816 -17.25502 -16.80911 -16.38929 -14.86130 -14.60745 -13.65432 -13.48709 -13.10316 -12.90639 -12.67781 -11.99714 -11.33659 -11.09382 -10.94001 -10.44950 -10.26784 -9.56414 -9.21122 -8.70375 -8.62148 -8.36096 -6.06633 -4.24085 2.09653 3.08497 3.28370 3.34281 3.39002 3.72493 4.37530 5.01740 5.16072 5.22990 5.49732 5.50218 5.76676 5.84374 6.16001 6.25936 6.33881 6.84194 7.51200 7.80129 8.04352 8.76924 9.10481 9.24966 9.50324 10.97884 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.067969 B = 0.011341 C = 0.010624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.850607 B = 2468.240148 C = 2634.877155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.064 4.064 3 C -0.230 4.230 4 C 0.027 3.973 5 C 0.297 3.703 6 H 0.078 0.922 7 O -0.557 6.557 8 C -0.562 4.562 9 H 0.059 0.941 10 C 0.079 3.921 11 N -0.860 5.860 12 Si 0.896 3.104 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.273 1.273 16 N -0.362 5.362 17 O 0.082 5.918 18 H 0.080 0.920 19 H 0.076 0.924 20 H 0.084 0.916 21 H 0.163 0.837 22 H 0.352 0.648 23 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.872 -2.473 -0.354 11.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.128 4.128 3 C -0.251 4.251 4 C -0.133 4.133 5 C 0.238 3.762 6 H 0.096 0.904 7 O -0.359 6.359 8 C -0.600 4.600 9 H 0.077 0.923 10 C -0.128 4.128 11 N -0.496 5.496 12 Si 0.723 3.277 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.198 1.198 16 N -0.070 5.070 17 O 0.019 5.981 18 H 0.098 0.902 19 H 0.095 0.905 20 H 0.103 0.897 21 H 0.181 0.819 22 H 0.196 0.804 23 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.940 -2.708 -0.477 10.313 hybrid contribution 0.291 -0.008 0.951 0.994 sum -9.649 -2.716 0.474 10.035 Atomic orbital electron populations 1.20181 0.84938 1.03859 1.03291 1.24352 0.95947 0.87129 1.05367 1.22496 0.92223 1.00467 1.09932 1.25419 0.99655 0.89886 0.98340 1.18001 0.80172 0.93613 0.84379 0.90445 1.86570 1.77946 1.29296 1.42093 1.21519 1.02300 1.23904 1.12306 0.92319 1.25036 0.97554 0.94168 0.95992 1.70068 1.18636 1.25158 1.35727 0.86543 0.80209 0.78393 0.82521 1.20360 1.20954 1.19790 1.73775 0.95426 1.17376 1.20410 1.84793 1.11905 1.33215 1.68236 0.90167 0.90493 0.89692 0.81948 0.80358 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.45 36.00 0.38 -0.29 14 2 C -0.06 -1.06 7.49 -35.30 -0.26 -1.32 14 3 C -0.23 -4.36 11.05 -39.38 -0.44 -4.80 14 4 C 0.03 0.62 6.12 -82.10 -0.50 0.12 14 5 C 0.30 7.96 3.35 -29.03 -0.10 7.86 14 6 H 0.08 2.15 8.14 -51.93 -0.42 1.73 14 7 O -0.56 -15.21 12.72 -35.23 -0.45 -15.66 14 8 C -0.56 -16.17 8.73 -34.44 -0.30 -16.47 14 9 H 0.06 1.72 7.74 -52.49 -0.41 1.31 14 10 C 0.08 2.25 5.40 -17.82 -0.10 2.16 14 11 N -0.86 -25.57 12.84 55.43 0.71 -24.85 14 12 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 14 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 14 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 14 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 14 16 N -0.36 -8.36 12.05 33.42 0.40 -7.96 14 17 O 0.08 1.62 11.20 17.19 0.19 1.81 14 18 H 0.08 0.70 8.14 -51.93 -0.42 0.27 14 19 H 0.08 0.68 8.14 -51.93 -0.42 0.26 14 20 H 0.08 0.73 8.14 -51.93 -0.42 0.31 14 21 H 0.16 2.62 8.06 -52.49 -0.42 2.20 14 22 H 0.35 8.90 9.03 45.56 0.41 9.31 14 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 14 LS Contribution 217.96 15.07 3.28 3.28 Total: -1.00 -32.34 217.96 -3.44 -35.78 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -1.24 Total: 3.61 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -1.32 Total: -12.74 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 1.11 Total: -32.81 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.26 Total: -13.85 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -32.34 -3.44 -35.78 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259896689.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.047 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds