Wall clock time and date at job start Mon Mar 30 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35457 * 126.77734 * 2 1 4 4 C 1.41381 * 103.98394 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.79764 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47358 * 5.00173 * 5 4 3 7 7 O 1.42903 * 109.47131 * 244.99813 * 5 4 3 8 8 C 1.50707 * 109.47163 * 125.00616 * 5 4 3 9 9 H 1.07995 * 119.99310 * 359.97438 * 8 5 4 10 10 C 1.37872 * 119.99931 * 179.97438 * 8 5 4 11 11 N 1.31515 * 120.00169 * 359.97438 * 10 8 5 12 12 Si 1.86805 * 119.99871 * 179.97438 * 10 8 5 13 13 H 1.48504 * 109.46985 * 89.99971 * 12 10 8 14 14 H 1.48502 * 109.47121 * 210.00067 * 12 10 8 15 15 H 1.48504 * 109.47079 * 330.00105 * 12 10 8 16 16 N 1.30176 * 106.39654 * 0.26410 * 4 3 2 17 17 O 1.20922 * 111.60163 * 359.53654 * 16 4 3 18 18 H 1.09001 * 109.47565 * 89.99587 * 1 2 3 19 19 H 1.08998 * 109.47192 * 209.99830 * 1 2 3 20 20 H 1.09004 * 109.46786 * 329.99749 * 1 2 3 21 21 H 1.08000 * 128.00383 * 0.02562 * 3 2 1 22 22 H 0.96700 * 114.00311 * 300.00591 * 7 5 4 23 23 H 0.96998 * 119.99752 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5372 0.0006 5 6 4.9210 1.3000 0.0014 6 1 4.7161 2.3668 0.0911 7 8 5.6207 1.0502 -1.2193 8 6 5.7662 0.8512 1.1656 9 1 5.3987 0.0900 1.8378 10 6 7.0085 1.4122 1.3724 11 7 7.4562 2.3388 0.5534 12 14 8.0559 0.8564 2.8159 13 1 8.9139 -0.2806 2.3960 14 1 8.9122 1.9820 3.2686 15 1 7.1741 0.4258 3.9305 16 7 3.4763 -0.7564 -0.0048 17 8 2.3094 -1.0736 0.0005 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 2.0344 2.1271 0.0004 22 1 5.8364 0.1190 -1.3656 23 1 8.3300 2.7337 0.6992 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259896689.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:21 Heat of formation + Delta-G solvation = -22.459326 kcal Electronic energy + Delta-G solvation = -10833.876991 eV Core-core repulsion = 8649.425115 eV Total energy + Delta-G solvation = -2184.451875 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.77979 -38.01924 -34.78141 -34.39102 -33.85862 -29.33997 -28.51045 -25.53488 -23.89939 -20.87788 -19.29643 -18.45945 -18.03956 -16.77505 -16.72007 -15.36643 -15.20968 -14.60464 -14.16573 -13.88384 -13.50260 -13.18055 -13.09768 -12.86463 -12.19477 -12.02258 -11.62719 -10.98930 -10.78986 -10.48182 -10.12795 -8.24568 -6.50767 0.68663 1.33836 1.36053 1.43219 1.49517 2.33690 2.43501 3.01506 3.49968 3.77908 4.14123 4.27700 4.49657 4.66424 4.80220 4.93490 5.08678 5.34241 5.40873 5.57545 5.89445 6.55271 7.12049 7.30389 7.55785 8.80401 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.067969 B = 0.011341 C = 0.010624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.850607 B = 2468.240148 C = 2634.877155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.035 4.035 3 C -0.249 4.249 4 C -0.007 4.007 5 C 0.296 3.704 6 H 0.058 0.942 7 O -0.571 6.571 8 C -0.580 4.580 9 H 0.047 0.953 10 C 0.030 3.970 11 N -0.894 5.894 12 Si 0.966 3.034 13 H -0.272 1.272 14 H -0.272 1.272 15 H -0.270 1.270 16 N -0.392 5.392 17 O 0.087 5.913 18 H 0.106 0.894 19 H 0.097 0.903 20 H 0.109 0.891 21 H 0.186 0.814 22 H 0.357 0.643 23 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.405 -2.944 0.324 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.099 4.099 3 C -0.271 4.271 4 C -0.166 4.166 5 C 0.238 3.762 6 H 0.075 0.925 7 O -0.373 6.373 8 C -0.618 4.618 9 H 0.065 0.935 10 C -0.173 4.173 11 N -0.530 5.530 12 Si 0.790 3.210 13 H -0.198 1.198 14 H -0.197 1.197 15 H -0.195 1.195 16 N -0.099 5.099 17 O 0.022 5.978 18 H 0.124 0.876 19 H 0.116 0.884 20 H 0.127 0.873 21 H 0.203 0.797 22 H 0.202 0.798 23 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.470 -3.176 0.199 11.904 hybrid contribution 0.639 0.117 0.696 0.952 sum -10.832 -3.060 0.895 11.291 Atomic orbital electron populations 1.20551 0.79863 1.06102 1.05566 1.25375 0.98201 0.85043 1.01313 1.22762 0.90583 1.02445 1.11279 1.25055 1.00001 0.90573 1.00926 1.17715 0.81806 0.93078 0.83568 0.92456 1.86507 1.78550 1.29818 1.42465 1.21715 1.03257 1.23865 1.12924 0.93518 1.25885 0.98682 0.94040 0.98735 1.70172 1.19239 1.26123 1.37471 0.85462 0.78358 0.78274 0.78908 1.19791 1.19652 1.19456 1.73737 0.97305 1.17350 1.21532 1.84732 1.11289 1.34231 1.67577 0.87610 0.88407 0.87267 0.79661 0.79812 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.45 71.23 0.74 -0.27 14 2 C -0.04 -1.07 7.49 25.04 0.19 -0.88 14 3 C -0.25 -9.16 11.05 22.40 0.25 -8.92 14 4 C -0.01 -0.35 6.12 43.58 0.27 -0.08 14 5 C 0.30 16.40 3.35 29.10 0.10 16.50 14 6 H 0.06 3.33 8.14 -2.39 -0.02 3.31 14 7 O -0.57 -32.17 12.72 -148.98 -1.89 -34.07 14 8 C -0.58 -34.10 8.73 25.60 0.22 -33.88 14 9 H 0.05 2.79 7.74 -2.91 -0.02 2.77 14 10 C 0.03 1.73 5.40 84.65 0.46 2.18 14 11 N -0.89 -53.87 12.84 21.45 0.28 -53.59 14 12 Si 0.97 44.87 29.54 68.60 2.03 46.90 14 13 H -0.27 -12.36 7.11 99.48 0.71 -11.65 14 14 H -0.27 -11.99 7.11 99.48 0.71 -11.29 14 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 14 16 N -0.39 -18.17 12.05 -49.56 -0.60 -18.77 14 17 O 0.09 3.31 11.20 71.67 0.80 4.11 14 18 H 0.11 1.28 8.14 -2.39 -0.02 1.26 14 19 H 0.10 1.23 8.14 -2.39 -0.02 1.21 14 20 H 0.11 1.31 8.14 -2.38 -0.02 1.29 14 21 H 0.19 5.70 8.06 -2.91 -0.02 5.68 14 22 H 0.36 18.75 9.03 -74.06 -0.67 18.08 14 23 H 0.27 15.04 8.31 -92.71 -0.77 14.27 14 Total: -1.00 -70.82 217.96 3.39 -67.43 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.56 Total: 13.34 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 2.22 Total: -25.34 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -0.32 Total: -72.36 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.09 Total: -29.96 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -70.82 3.39 -67.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259896689.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.967 kcal (2) G-P(sol) polarization free energy of solvation -70.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds