Wall clock time and date at job start Mon Mar 30 2020 01:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47105 * 2 1 4 4 C 1.50698 * 109.46876 * 239.99921 * 2 1 3 5 5 H 1.08007 * 120.00254 * 275.06068 * 4 2 1 6 6 C 1.37876 * 120.00393 * 95.06573 * 4 2 1 7 7 N 1.31513 * 120.00301 * 184.91227 * 6 4 2 8 8 Si 1.86798 * 119.99746 * 4.91026 * 6 4 2 9 9 H 1.48494 * 109.47245 * 84.82930 * 8 6 4 10 10 H 1.48495 * 109.47341 * 204.83245 * 8 6 4 11 11 H 1.48499 * 109.46969 * 324.82974 * 8 6 4 12 12 C 1.50698 * 109.46865 * 120.00101 * 2 1 3 13 13 N 1.28250 * 122.70649 * 95.19034 * 12 2 1 14 14 C 1.46980 * 110.18324 * 180.25272 * 13 12 2 15 15 C 1.54214 * 103.83493 * 359.75113 * 14 13 12 16 16 N 1.36285 * 122.70386 * 274.99604 * 12 2 1 17 17 C 1.46505 * 125.83271 * 0.02562 * 16 12 2 18 18 H 1.08998 * 109.47239 * 295.03170 * 1 2 3 19 19 H 1.08996 * 109.46671 * 55.03181 * 1 2 3 20 20 H 1.08999 * 109.47217 * 175.02717 * 1 2 3 21 21 H 0.97000 * 119.99614 * 179.97438 * 7 6 4 22 22 H 1.09005 * 110.54748 * 241.16825 * 14 13 12 23 23 H 1.08996 * 110.67925 * 118.40204 * 14 13 12 24 24 H 1.09004 * 110.70110 * 241.60910 * 15 14 13 25 25 H 1.09007 * 110.69988 * 118.39776 * 15 14 13 26 26 H 1.09000 * 109.47150 * 179.71374 * 17 16 12 27 27 H 1.09003 * 109.46862 * 59.71602 * 17 16 12 28 28 H 1.08991 * 109.47102 * 299.71394 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1345 -1.7856 -1.2294 6 6 2.3615 0.0121 -2.3576 7 7 2.7072 -0.6131 -3.4618 8 14 2.3164 1.8791 -2.3164 9 1 3.6021 2.3936 -1.7803 10 1 2.1099 2.3997 -3.6917 11 1 1.2014 2.3281 -1.4446 12 6 2.0323 -0.7104 1.2304 13 7 2.3553 -1.9516 1.2307 14 6 2.8007 -2.3594 2.5707 15 6 2.6835 -1.0690 3.4069 16 7 2.1836 -0.0848 2.4317 17 6 1.8925 1.3243 2.7076 18 1 -0.3633 0.4348 0.9311 19 1 -0.3632 0.5890 -0.8421 20 1 -0.3633 -1.0238 -0.0891 21 1 2.9384 -0.1047 -4.2549 22 1 3.8343 -2.7042 2.5419 23 1 2.1503 -3.1363 2.9726 24 1 3.6583 -0.7692 3.7916 25 1 1.9708 -1.2008 4.2212 26 1 2.1036 1.5406 3.7548 27 1 0.8416 1.5256 2.4997 28 1 2.5156 1.9548 2.0736 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259900664.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:53 Heat of formation + Delta-G solvation = 33.354091 kcal Electronic energy + Delta-G solvation = -11243.532570 eV Core-core repulsion = 9295.052703 eV Total energy + Delta-G solvation = -1948.479867 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.41652 -34.08506 -32.54092 -31.40989 -28.38173 -25.98244 -25.13988 -21.78534 -21.57821 -17.92204 -16.72217 -15.70809 -15.46353 -14.23279 -14.03784 -13.24426 -12.86629 -12.48079 -12.28566 -12.02446 -11.72304 -11.69749 -11.28660 -10.93875 -10.67310 -10.17882 -9.73731 -9.57475 -9.16207 -8.73156 -8.47557 -7.15908 -5.98035 -3.95819 3.28773 3.36116 3.38157 3.51946 3.69629 4.45539 5.09355 5.25076 5.30473 5.38943 5.55022 5.71055 5.80390 5.91460 6.07534 6.25736 6.33568 6.46030 6.68420 6.83044 6.93077 7.08311 7.33961 7.70487 8.19021 8.62478 9.06038 9.24795 9.62488 11.15306 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.047903 B = 0.015178 C = 0.013284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.373710 B = 1844.302716 C = 2107.361050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.064 3.936 3 H 0.043 0.957 4 C -0.491 4.491 5 H 0.094 0.906 6 C 0.069 3.931 7 N -0.898 5.898 8 Si 0.867 3.133 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.265 1.265 12 C 0.393 3.607 13 N -0.557 5.557 14 C 0.018 3.982 15 C 0.079 3.921 16 N -0.661 5.661 17 C 0.115 3.885 18 H 0.022 0.978 19 H 0.052 0.948 20 H 0.053 0.947 21 H 0.263 0.737 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 4.313 12.120 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.043 3.957 3 H 0.061 0.939 4 C -0.529 4.529 5 H 0.112 0.888 6 C -0.132 4.132 7 N -0.536 5.536 8 Si 0.695 3.305 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.190 1.190 12 C 0.117 3.883 13 N -0.283 5.283 14 C -0.112 4.112 15 C -0.046 4.046 16 N -0.386 5.386 17 C -0.029 4.029 18 H 0.041 0.959 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.686 3.601 11.456 12.126 hybrid contribution 0.207 1.615 0.771 1.801 sum -1.479 5.216 12.227 13.375 Atomic orbital electron populations 1.21919 0.97012 1.01372 0.98555 1.18142 0.93050 0.94912 0.89554 0.93878 1.20935 1.42163 0.96613 0.93198 0.88812 1.25046 0.95034 0.97669 0.95477 1.69888 1.46689 1.35438 1.01616 0.87018 0.78873 0.87315 0.77337 1.20330 1.21362 1.18988 1.23842 0.88171 0.89586 0.86677 1.74404 1.26145 1.11451 1.16258 1.23104 1.01090 0.95804 0.91218 1.22506 0.98250 0.91104 0.92729 1.48200 1.71585 1.09431 1.09404 1.21282 1.00425 0.80778 1.00438 0.95915 0.92895 0.92743 0.92725 0.90820 0.90973 0.92221 0.92287 0.91682 0.92770 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.16 37.16 0.34 -2.44 15 2 C 0.06 1.55 1.93 -92.92 -0.18 1.37 15 3 H 0.04 1.02 4.81 -51.93 -0.25 0.77 15 4 C -0.49 -14.15 8.58 -34.44 -0.30 -14.44 15 5 H 0.09 3.04 7.52 -52.48 -0.39 2.65 15 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 7 N -0.90 -27.85 13.96 55.43 0.77 -27.08 15 8 Si 0.87 21.19 26.99 -169.99 -4.59 16.60 15 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 11 H -0.27 -6.02 6.82 56.52 0.39 -5.64 15 12 C 0.39 8.89 6.63 -156.10 -1.03 7.86 15 13 N -0.56 -13.20 10.49 -57.40 -0.60 -13.80 15 14 C 0.02 0.32 8.06 -3.15 -0.03 0.30 15 15 C 0.08 1.23 7.75 -2.98 -0.02 1.21 15 16 N -0.66 -12.13 3.44 -178.03 -0.61 -12.74 15 17 C 0.11 1.66 10.51 59.85 0.63 2.29 15 18 H 0.02 0.41 7.61 -51.93 -0.40 0.02 15 19 H 0.05 1.12 8.14 -51.93 -0.42 0.69 15 20 H 0.05 1.20 8.14 -51.93 -0.42 0.77 15 21 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 22 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 26 H 0.06 0.73 8.11 -51.93 -0.42 0.31 15 27 H 0.05 0.75 7.61 -51.93 -0.40 0.35 15 28 H 0.05 0.78 8.04 -51.93 -0.42 0.36 15 LS Contribution 234.85 15.07 3.54 3.54 Total: -1.00 -32.26 234.85 -6.14 -38.40 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -3.96 Total: -2.96 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.69 Total: -1.96 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.44 Total: -53.62 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.59 Total: 16.60 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -32.26 -6.14 -38.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259900664.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.754 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds