Wall clock time and date at job start Mon Mar 30 2020 01:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47105 * 2 1 4 4 C 1.50698 * 109.46876 * 239.99921 * 2 1 3 5 5 H 1.08007 * 120.00254 * 275.06068 * 4 2 1 6 6 C 1.37876 * 120.00393 * 95.06573 * 4 2 1 7 7 N 1.31513 * 120.00301 * 184.91227 * 6 4 2 8 8 Si 1.86798 * 119.99746 * 4.91026 * 6 4 2 9 9 H 1.48494 * 109.47245 * 84.82930 * 8 6 4 10 10 H 1.48495 * 109.47341 * 204.83245 * 8 6 4 11 11 H 1.48499 * 109.46969 * 324.82974 * 8 6 4 12 12 C 1.50698 * 109.46865 * 120.00101 * 2 1 3 13 13 N 1.28250 * 122.70649 * 95.19034 * 12 2 1 14 14 C 1.46980 * 110.18324 * 180.25272 * 13 12 2 15 15 C 1.54214 * 103.83493 * 359.75113 * 14 13 12 16 16 N 1.36285 * 122.70386 * 274.99604 * 12 2 1 17 17 C 1.46505 * 125.83271 * 0.02562 * 16 12 2 18 18 H 1.08998 * 109.47239 * 295.03170 * 1 2 3 19 19 H 1.08996 * 109.46671 * 55.03181 * 1 2 3 20 20 H 1.08999 * 109.47217 * 175.02717 * 1 2 3 21 21 H 0.97000 * 119.99614 * 179.97438 * 7 6 4 22 22 H 1.09005 * 110.54748 * 241.16825 * 14 13 12 23 23 H 1.08996 * 110.67925 * 118.40204 * 14 13 12 24 24 H 1.09004 * 110.70110 * 241.60910 * 15 14 13 25 25 H 1.09007 * 110.69988 * 118.39776 * 15 14 13 26 26 H 1.09000 * 109.47150 * 179.71374 * 17 16 12 27 27 H 1.09003 * 109.46862 * 59.71602 * 17 16 12 28 28 H 1.08991 * 109.47102 * 299.71394 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1345 -1.7856 -1.2294 6 6 2.3615 0.0121 -2.3576 7 7 2.7072 -0.6131 -3.4618 8 14 2.3164 1.8791 -2.3164 9 1 3.6021 2.3936 -1.7803 10 1 2.1099 2.3997 -3.6917 11 1 1.2014 2.3281 -1.4446 12 6 2.0323 -0.7104 1.2304 13 7 2.3553 -1.9516 1.2307 14 6 2.8007 -2.3594 2.5707 15 6 2.6835 -1.0690 3.4069 16 7 2.1836 -0.0848 2.4317 17 6 1.8925 1.3243 2.7076 18 1 -0.3633 0.4348 0.9311 19 1 -0.3632 0.5890 -0.8421 20 1 -0.3633 -1.0238 -0.0891 21 1 2.9384 -0.1047 -4.2549 22 1 3.8343 -2.7042 2.5419 23 1 2.1503 -3.1363 2.9726 24 1 3.6583 -0.7692 3.7916 25 1 1.9708 -1.2008 4.2212 26 1 2.1036 1.5406 3.7548 27 1 0.8416 1.5256 2.4997 28 1 2.5156 1.9548 2.0736 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259900664.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:53 Heat of formation + Delta-G solvation = 9.776122 kcal Electronic energy + Delta-G solvation = -11244.554987 eV Core-core repulsion = 9295.052703 eV Total energy + Delta-G solvation = -1949.502285 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.91217 -35.99599 -33.93802 -33.46251 -29.87545 -27.24427 -27.17706 -23.55192 -23.01030 -19.60769 -18.78551 -17.22998 -16.81677 -16.16285 -15.48381 -14.73039 -14.44309 -14.33115 -14.00998 -13.38871 -13.26828 -12.95770 -12.81592 -12.66336 -12.52380 -11.85787 -11.68183 -11.27656 -11.15255 -10.67598 -10.34290 -8.60035 -8.19909 -6.24239 1.37585 1.39484 1.50224 1.87611 2.38188 2.40167 3.14538 3.73961 3.92078 4.20950 4.24858 4.44077 4.54320 4.66200 4.72238 4.80890 4.88637 4.96844 5.05255 5.15964 5.25731 5.56059 5.67874 5.75293 6.37270 6.74987 6.92232 7.38042 7.49740 8.97655 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.047903 B = 0.015178 C = 0.013284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.373710 B = 1844.302716 C = 2107.361050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.062 3.938 3 H 0.055 0.945 4 C -0.496 4.496 5 H 0.037 0.963 6 C 0.004 3.996 7 N -0.954 5.954 8 Si 0.940 3.060 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.230 1.230 12 C 0.383 3.617 13 N -0.619 5.619 14 C 0.011 3.989 15 C 0.085 3.915 16 N -0.661 5.661 17 C 0.105 3.895 18 H 0.059 0.941 19 H 0.054 0.946 20 H 0.035 0.965 21 H 0.264 0.736 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 6.826 14.570 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.041 3.959 3 H 0.073 0.927 4 C -0.535 4.535 5 H 0.055 0.945 6 C -0.192 4.192 7 N -0.594 5.594 8 Si 0.763 3.237 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.153 1.153 12 C 0.106 3.894 13 N -0.347 5.347 14 C -0.118 4.118 15 C -0.039 4.039 16 N -0.386 5.386 17 C -0.038 4.038 18 H 0.078 0.922 19 H 0.073 0.927 20 H 0.055 0.945 21 H 0.073 0.927 22 H 0.093 0.907 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.279 6.133 13.962 15.419 hybrid contribution 0.412 0.694 0.051 0.809 sum -1.867 6.827 14.013 15.699 Atomic orbital electron populations 1.21775 0.94977 1.00733 1.00596 1.18062 0.94592 0.94858 0.88358 0.92707 1.21042 1.42159 0.94528 0.95763 0.94450 1.26021 0.94566 1.03964 0.94646 1.70077 1.48684 1.37997 1.02687 0.85850 0.80291 0.79561 0.78034 1.19489 1.21296 1.15276 1.23458 0.88457 0.89700 0.87780 1.74316 1.27481 1.12864 1.19998 1.23223 1.01271 0.97755 0.89593 1.22641 1.00205 0.88812 0.92234 1.48363 1.70797 1.11126 1.08290 1.21595 1.00990 0.78336 1.02847 0.92199 0.92664 0.94541 0.92672 0.90732 0.89809 0.90053 0.89224 0.87931 0.91836 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.16 71.98 0.66 -4.35 15 2 C 0.06 2.92 1.93 -12.29 -0.02 2.89 15 3 H 0.06 2.43 4.81 -2.39 -0.01 2.42 15 4 C -0.50 -29.47 8.58 25.60 0.22 -29.25 15 5 H 0.04 2.58 7.52 -2.91 -0.02 2.56 15 6 C 0.00 0.22 5.47 84.65 0.46 0.69 15 7 N -0.95 -61.40 13.96 21.45 0.30 -61.10 15 8 Si 0.94 43.12 26.99 68.60 1.85 44.98 15 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 10 H -0.29 -13.06 7.11 99.48 0.71 -12.36 15 11 H -0.23 -9.18 6.82 99.48 0.68 -8.50 15 12 C 0.38 16.90 6.63 138.37 0.92 17.82 15 13 N -0.62 -29.64 10.49 -335.51 -3.52 -33.16 15 14 C 0.01 0.39 8.06 86.70 0.70 1.09 15 15 C 0.08 2.35 7.75 86.64 0.67 3.03 15 16 N -0.66 -22.07 3.44 -717.16 -2.47 -24.54 15 17 C 0.10 2.53 10.51 127.77 1.34 3.88 15 18 H 0.06 1.99 7.61 -2.39 -0.02 1.98 15 19 H 0.05 2.20 8.14 -2.39 -0.02 2.18 15 20 H 0.04 1.59 8.14 -2.39 -0.02 1.57 15 21 H 0.26 15.84 8.31 -92.71 -0.77 15.07 15 22 H 0.07 2.52 8.14 -2.38 -0.02 2.50 15 23 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15 24 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 25 H 0.09 1.98 8.14 -2.38 -0.02 1.96 15 26 H 0.10 1.71 8.11 -2.39 -0.02 1.70 15 27 H 0.06 1.43 7.61 -2.39 -0.02 1.41 15 28 H 0.05 1.26 8.04 -2.39 -0.02 1.24 15 Total: -1.00 -73.24 234.85 2.21 -71.04 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.10 Total: 6.99 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 4.95 Total: -4.21 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -5.69 Total: -118.80 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.85 Total: 44.98 kcal Total: -73.24 2.21 -71.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259900664.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.811 kcal (2) G-P(sol) polarization free energy of solvation -73.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds