Wall clock time and date at job start Mon Mar 30 2020 02:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30250 * 125.61773 * 2 1 4 4 C 1.34473 * 108.70372 * 179.97438 * 3 2 1 5 5 C 1.34335 * 107.66638 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.44385 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47103 * 24.99856 * 6 5 4 8 8 O 1.42905 * 109.46972 * 144.99669 * 6 5 4 9 9 C 1.50703 * 109.47227 * 264.99815 * 6 5 4 10 10 H 1.07997 * 119.99722 * 359.97438 * 9 6 5 11 11 C 1.37873 * 119.99873 * 180.02562 * 9 6 5 12 12 N 1.31512 * 120.00006 * 180.02562 * 11 9 6 13 13 Si 1.86800 * 120.00328 * 0.02562 * 11 9 6 14 14 H 1.48501 * 109.47509 * 89.99743 * 13 11 9 15 15 H 1.48494 * 109.47205 * 210.00004 * 13 11 9 16 16 H 1.48501 * 109.47041 * 330.00003 * 13 11 9 17 17 O 1.33963 * 125.61942 * 180.28703 * 2 1 3 18 18 H 1.09004 * 109.47332 * 90.02616 * 1 2 3 19 19 H 1.09007 * 109.47379 * 210.02036 * 1 2 3 20 20 H 1.08995 * 109.47307 * 330.02119 * 1 2 3 21 21 H 1.07999 * 126.17125 * 179.97438 * 4 3 2 22 22 H 0.96702 * 113.99404 * 60.00156 * 8 6 5 23 23 H 0.97001 * 120.00117 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0588 0.0000 4 6 3.5521 0.6676 0.0006 5 6 3.5697 -0.6756 0.0004 6 6 4.7937 -1.5548 0.0003 7 1 5.6322 -1.0104 0.4347 8 8 4.5366 -2.7292 0.7729 9 6 5.1295 -1.9483 -1.4152 10 1 4.5175 -1.5972 -2.2329 11 6 6.2173 -2.7574 -1.6662 12 7 6.5106 -3.1004 -2.9014 13 14 7.2745 -3.3665 -0.2517 14 1 6.7403 -4.6603 0.2443 15 1 8.6702 -3.5550 -0.7223 16 1 7.2534 -2.3683 0.8476 17 8 2.2872 -1.0890 -0.0055 18 1 -0.3634 -0.0005 -1.0277 19 1 -0.3634 -0.8898 0.5142 20 1 -0.3633 0.8901 0.5135 21 1 4.4156 1.3163 0.0003 22 1 3.8013 -3.2637 0.4432 23 1 7.2758 -3.6699 -3.0780 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259903629.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:18 Heat of formation + Delta-G solvation = -32.898206 kcal Electronic energy + Delta-G solvation = -10893.859787 eV Core-core repulsion = 8708.955248 eV Total energy + Delta-G solvation = -2184.904539 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.67119 -36.27866 -34.11204 -32.47921 -31.77565 -28.93898 -26.04579 -22.71111 -21.57185 -20.23631 -17.73463 -16.57328 -15.98505 -15.13294 -14.84370 -14.08585 -13.30225 -13.02411 -12.90224 -12.60365 -12.39977 -11.93419 -11.29782 -10.95169 -10.69004 -10.41740 -10.05838 -9.53606 -9.01562 -8.82717 -7.90583 -6.30005 -4.46052 2.12706 3.24751 3.29387 3.33714 3.38505 3.48526 4.33301 4.56024 4.96299 5.33934 5.52196 5.57628 5.60666 5.79234 5.90612 6.25154 6.51278 6.90358 6.99960 7.21947 8.08021 8.29394 8.57179 8.75700 9.27525 10.79581 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.071936 B = 0.012046 C = 0.011690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.141363 B = 2323.903839 C = 2394.700046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.149 3.851 3 N -0.483 5.483 4 C -0.072 4.072 5 C -0.007 4.007 6 C 0.271 3.729 7 H 0.097 0.903 8 O -0.579 6.579 9 C -0.566 4.566 10 H 0.077 0.923 11 C 0.087 3.913 12 N -0.881 5.881 13 Si 0.913 3.087 14 H -0.275 1.275 15 H -0.300 1.300 16 H -0.266 1.266 17 O -0.198 6.198 18 H 0.085 0.915 19 H 0.082 0.918 20 H 0.093 0.907 21 H 0.178 0.822 22 H 0.370 0.630 23 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.383 2.965 5.989 9.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.057 4.057 3 N -0.214 5.214 4 C -0.210 4.210 5 C -0.061 4.061 6 C 0.214 3.786 7 H 0.114 0.886 8 O -0.385 6.385 9 C -0.603 4.603 10 H 0.096 0.904 11 C -0.119 4.119 12 N -0.517 5.517 13 Si 0.742 3.258 14 H -0.200 1.200 15 H -0.227 1.227 16 H -0.191 1.191 17 O -0.085 6.085 18 H 0.104 0.896 19 H 0.101 0.899 20 H 0.111 0.889 21 H 0.196 0.804 22 H 0.218 0.782 23 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.028 3.665 6.210 10.069 hybrid contribution 0.468 -1.081 0.059 1.180 sum -6.560 2.584 6.269 9.435 Atomic orbital electron populations 1.20075 0.82171 1.04255 1.04009 1.26043 0.96269 0.79386 1.04050 1.70257 1.02382 1.30567 1.18210 1.22856 0.94520 0.93320 1.10260 1.25189 0.83856 0.96521 1.00518 1.18826 0.85104 0.81451 0.93266 0.88623 1.86390 1.56047 1.38295 1.57762 1.21320 1.14619 1.33642 0.90704 0.90447 1.24976 0.96463 0.94277 0.96180 1.69925 1.27758 1.34541 1.19467 0.86251 0.77623 0.80377 0.81546 1.20031 1.22739 1.19101 1.84350 1.16979 1.37438 1.69699 0.89627 0.89917 0.88863 0.80436 0.78199 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.56 10.51 36.01 0.38 -0.18 14 2 C 0.15 2.72 8.34 -12.95 -0.11 2.61 14 3 N -0.48 -9.70 11.29 -11.10 -0.13 -9.83 14 4 C -0.07 -1.49 11.80 -17.77 -0.21 -1.70 14 5 C -0.01 -0.15 6.19 -35.69 -0.22 -0.37 14 6 C 0.27 6.45 2.78 -29.03 -0.08 6.37 14 7 H 0.10 2.22 7.20 -51.93 -0.37 1.85 14 8 O -0.58 -13.21 11.02 -38.39 -0.42 -13.63 14 9 C -0.57 -15.65 9.33 -34.44 -0.32 -15.97 14 10 H 0.08 2.37 7.98 -52.49 -0.42 1.95 14 11 C 0.09 2.45 5.47 -17.82 -0.10 2.35 14 12 N -0.88 -26.13 13.96 55.43 0.77 -25.36 14 13 Si 0.91 22.18 26.18 -169.99 -4.45 17.73 14 14 H -0.27 -6.66 7.11 56.52 0.40 -6.26 14 15 H -0.30 -7.19 7.11 56.52 0.40 -6.78 14 16 H -0.27 -6.31 6.54 56.52 0.37 -5.94 14 17 O -0.20 -4.14 10.69 2.22 0.02 -4.12 14 18 H 0.09 0.89 8.14 -51.93 -0.42 0.47 14 19 H 0.08 0.81 8.14 -51.92 -0.42 0.39 14 20 H 0.09 0.94 8.14 -51.93 -0.42 0.51 14 21 H 0.18 3.24 8.06 -52.49 -0.42 2.82 14 22 H 0.37 7.59 8.96 45.56 0.41 8.00 14 23 H 0.27 7.45 8.31 -40.82 -0.34 7.11 14 LS Contribution 213.25 15.07 3.21 3.21 Total: -1.00 -31.87 213.25 -2.89 -34.76 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -1.24 Total: 4.11 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.66 Total: -6.89 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.65 Total: -35.19 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.40 Total: -17.75 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.45 Total: 17.73 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -31.87 -2.89 -34.76 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259903629.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.865 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds