Wall clock time and date at job start Mon Mar 30 2020 02:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33644 * 126.03938 * 2 1 4 4 N 1.31771 * 114.50041 * 180.02562 * 3 2 1 5 5 C 1.29028 * 117.12878 * 359.97438 * 4 3 2 6 6 C 1.50701 * 124.91855 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.46791 * 90.00020 * 6 5 4 8 8 H 1.07999 * 120.00402 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99803 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99952 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00179 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46736 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46821 * 120.00148 * 11 9 7 14 14 H 1.48497 * 109.47042 * 240.00366 * 11 9 7 15 15 S 1.70979 * 110.16576 * 359.97438 * 5 4 3 16 16 H 1.09001 * 109.47050 * 90.00187 * 1 2 3 17 17 H 1.08996 * 109.47247 * 210.00530 * 1 2 3 18 18 H 1.09005 * 109.47214 * 330.00706 * 1 2 3 19 19 H 1.08002 * 122.74545 * 359.72316 * 3 2 1 20 20 H 1.08998 * 109.46948 * 209.99747 * 6 5 4 21 21 H 1.09001 * 109.47109 * 330.00084 * 6 5 4 22 22 H 0.96997 * 119.99974 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0807 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9311 -0.4257 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 6 5.8272 -1.0907 1.4204 8 1 5.1651 -0.8580 2.2413 9 6 7.1062 -1.5399 1.6724 10 7 7.9127 -1.8228 0.6727 11 14 7.6940 -1.7452 3.4335 12 1 6.6043 -1.3624 4.3668 13 1 8.0706 -3.1625 3.6676 14 1 8.8743 -0.8745 3.6661 15 16 2.5436 -1.4248 0.0010 16 1 -0.3633 0.0000 -1.0277 17 1 -0.3633 -0.8899 0.5139 18 1 -0.3634 0.8901 0.5137 19 1 1.9025 2.0875 -0.0044 20 1 5.4014 -1.8846 -0.5142 21 1 5.9906 -0.2050 -0.5144 22 1 8.8125 -2.1384 0.8500 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259951462.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:06 Heat of formation + Delta-G solvation = 5.726395 kcal Electronic energy + Delta-G solvation = -8632.245511 eV Core-core repulsion = 6891.768732 eV Total energy + Delta-G solvation = -1740.476780 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.47792 -35.61560 -33.67996 -31.27545 -27.43205 -25.53828 -23.90032 -20.05511 -18.84739 -18.59623 -16.67296 -15.87176 -15.57448 -14.65847 -14.40805 -14.18580 -13.60684 -13.44450 -13.21079 -12.70244 -12.60412 -12.07546 -11.94972 -11.60230 -10.68593 -10.37392 -10.08733 -9.49942 -8.26948 -6.40856 -0.08918 0.54864 0.97092 1.39292 1.40116 1.53538 2.02239 2.39163 3.05000 3.56557 4.16108 4.37179 4.49453 4.79655 4.93574 5.05978 5.16928 5.24248 5.47421 5.62958 6.00862 6.66341 7.01879 7.27454 8.83418 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.076183 B = 0.010474 C = 0.010280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.449473 B = 2672.711364 C = 2723.106249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.236 4.236 3 C 0.011 3.989 4 N -0.522 5.522 5 C 0.068 3.932 6 C 0.093 3.907 7 C -0.532 4.532 8 H 0.051 0.949 9 C 0.011 3.989 10 N -0.924 5.924 11 Si 0.971 3.029 12 H -0.268 1.268 13 H -0.269 1.269 14 H -0.275 1.275 15 S 0.111 5.889 16 H 0.089 0.911 17 H 0.077 0.923 18 H 0.096 0.904 19 H 0.195 0.805 20 H 0.029 0.971 21 H 0.019 0.981 22 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.136 1.153 -0.100 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.357 4.357 3 C -0.139 4.139 4 N -0.237 5.237 5 C -0.209 4.209 6 C 0.053 3.947 7 C -0.571 4.571 8 H 0.070 0.930 9 C -0.189 4.189 10 N -0.563 5.563 11 Si 0.795 3.205 12 H -0.192 1.192 13 H -0.194 1.194 14 H -0.201 1.201 15 S 0.365 5.635 16 H 0.108 0.892 17 H 0.096 0.904 18 H 0.115 0.885 19 H 0.212 0.788 20 H 0.047 0.953 21 H 0.037 0.963 22 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.706 0.422 -0.159 12.714 hybrid contribution 0.570 0.807 0.597 1.154 sum -12.136 1.229 0.438 12.206 Atomic orbital electron populations 1.20318 0.83690 1.04428 1.03989 1.26422 1.03041 0.93944 1.12295 1.22131 0.86479 1.01458 1.03796 1.66305 1.19305 1.19687 1.18364 1.27472 1.02310 0.91174 0.99963 1.17748 0.83759 0.95374 0.97822 1.21197 0.99028 1.45484 0.91391 0.93033 1.25893 0.96347 0.94388 1.02248 1.70060 1.08016 1.45188 1.33062 0.85307 0.78241 0.78324 0.78640 1.19231 1.19442 1.20052 1.83577 0.98359 1.12635 1.68916 0.89203 0.90424 0.88537 0.78801 0.95283 0.96274 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.42 71.24 0.74 -0.50 14 2 C -0.24 -7.24 6.60 24.64 0.16 -7.08 14 3 C 0.01 0.39 11.25 83.66 0.94 1.33 14 4 N -0.52 -23.92 10.54 -191.44 -2.02 -25.93 14 5 C 0.07 3.22 6.58 88.52 0.58 3.80 14 6 C 0.09 5.16 5.56 29.10 0.16 5.33 14 7 C -0.53 -31.04 9.09 25.60 0.23 -30.81 14 8 H 0.05 3.01 7.74 -2.91 -0.02 2.98 14 9 C 0.01 0.60 5.46 84.65 0.46 1.07 14 10 N -0.92 -55.26 13.29 21.45 0.28 -54.97 14 11 Si 0.97 44.45 29.54 68.60 2.03 46.48 14 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 14 13 H -0.27 -11.72 7.11 99.48 0.71 -11.02 14 14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 14 15 S 0.11 4.12 23.18 -56.49 -1.31 2.81 14 16 H 0.09 1.42 8.14 -2.39 -0.02 1.40 14 17 H 0.08 1.34 8.14 -2.39 -0.02 1.32 14 18 H 0.10 1.45 8.14 -2.38 -0.02 1.43 14 19 H 0.20 5.30 8.06 -2.91 -0.02 5.28 14 20 H 0.03 1.63 8.14 -2.39 -0.02 1.61 14 21 H 0.02 1.15 8.14 -2.39 -0.02 1.13 14 22 H 0.27 14.96 8.31 -92.71 -0.77 14.19 14 Total: -1.00 -66.46 217.63 3.48 -62.99 By element: Atomic # 1 Polarization: -5.71 SS G_CDS: 1.21 Total: -4.50 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 3.28 Total: -26.87 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -1.73 Total: -80.91 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.31 Total: 2.81 kcal Total: -66.46 3.48 -62.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951462.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.715 kcal (2) G-P(sol) polarization free energy of solvation -66.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds