Wall clock time and date at job start Mon Mar 30 2020 02:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35063 * 120.46144 * 2 1 4 4 O 1.21293 * 120.32033 * 0.99902 * 3 2 1 5 5 C 1.50845 * 119.36649 * 181.02217 * 3 2 1 6 6 O 1.42980 * 109.33794 * 329.06025 * 5 3 2 7 7 C 1.35239 * 116.82468 * 46.84809 * 6 5 3 8 8 C 1.38017 * 119.60617 * 326.52948 * 7 6 5 9 9 C 1.40051 * 120.38163 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99889 * 205.54916 * 9 8 7 11 11 C 1.39893 * 119.99589 * 25.55800 * 9 8 7 12 12 N 1.30977 * 120.00588 * 17.72517 * 11 9 8 13 13 Si 1.86805 * 119.99657 * 197.72750 * 11 9 8 14 14 H 1.48499 * 109.47078 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47503 * 119.99639 * 13 11 9 16 16 H 1.48504 * 109.47098 * 240.00172 * 13 11 9 17 17 H 1.09000 * 109.46897 * 359.97438 * 1 2 3 18 18 H 1.08994 * 109.47284 * 120.00404 * 1 2 3 19 19 H 1.09007 * 109.47176 * 240.00228 * 1 2 3 20 20 H 1.08997 * 109.50144 * 89.02762 * 5 3 2 21 21 H 1.09000 * 109.50074 * 209.09910 * 5 3 2 22 22 H 1.07997 * 120.19073 * 146.50102 * 7 6 5 23 23 H 0.96997 * 120.00616 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1642 0.0000 4 8 1.5578 2.2227 0.0183 5 6 3.6577 1.1355 -0.0235 6 8 4.1195 -0.0367 0.6526 7 6 3.5154 -1.2036 0.3327 8 6 2.1760 -1.2091 -0.0004 9 6 1.5342 -2.4081 -0.3349 10 1 0.6604 -2.3941 -0.9694 11 6 2.0250 -3.6239 0.1531 12 7 2.8434 -3.6367 1.1756 13 14 1.5131 -5.2291 -0.6537 14 1 0.5884 -4.9440 -1.7801 15 1 2.7169 -5.9313 -1.1665 16 1 0.8266 -6.0879 0.3445 17 1 -0.3633 1.0277 0.0005 18 1 -0.3633 -0.5139 -0.8899 19 1 -0.3634 -0.5138 0.8901 20 1 4.0053 1.1204 -1.0564 21 1 4.0464 2.0216 0.4783 22 1 4.0778 -2.1255 0.3375 23 1 3.1840 -4.4797 1.5138 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260125537.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:31 Heat of formation + Delta-G solvation = -55.947134 kcal Electronic energy + Delta-G solvation = -11166.771577 eV Core-core repulsion = 8980.867561 eV Total energy + Delta-G solvation = -2185.904016 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.74633 -36.86665 -35.20936 -33.34670 -29.02667 -28.16533 -26.24963 -23.39984 -21.74117 -17.92670 -17.18820 -16.82123 -15.91159 -14.91062 -14.70406 -13.76382 -13.53274 -12.97031 -12.77132 -12.45743 -11.83701 -11.44385 -11.24485 -11.11603 -10.50771 -10.36573 -10.11527 -9.53051 -8.95513 -8.70602 -6.75056 -6.47882 -4.30167 2.81304 3.02936 3.08599 3.12826 3.74496 3.96188 4.00562 4.93040 5.18559 5.33502 5.86967 5.94286 6.11782 6.19929 6.39557 6.88791 7.12074 7.44496 7.68170 8.13651 8.27595 8.46578 8.84413 8.89251 9.37360 10.26023 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.059693 B = 0.014830 C = 0.012509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.954991 B = 1887.638756 C = 2237.802835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.543 5.543 3 C 0.477 3.523 4 O -0.566 6.566 5 C 0.047 3.953 6 O -0.319 6.319 7 C -0.187 4.187 8 C 0.188 3.812 9 C -0.468 4.468 10 H 0.076 0.924 11 C 0.075 3.925 12 N -0.798 5.798 13 Si 0.913 3.087 14 H -0.263 1.263 15 H -0.272 1.272 16 H -0.276 1.276 17 H 0.072 0.928 18 H 0.059 0.941 19 H 0.062 0.938 20 H 0.068 0.932 21 H 0.112 0.888 22 H 0.172 0.828 23 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 0.200 -2.502 2.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.267 5.267 3 C 0.267 3.733 4 O -0.448 6.448 5 C -0.032 4.032 6 O -0.234 6.234 7 C -0.252 4.252 8 C 0.096 3.904 9 C -0.500 4.500 10 H 0.094 0.906 11 C -0.142 4.142 12 N -0.425 5.425 13 Si 0.738 3.262 14 H -0.187 1.187 15 H -0.198 1.198 16 H -0.202 1.202 17 H 0.091 0.909 18 H 0.078 0.922 19 H 0.080 0.920 20 H 0.085 0.915 21 H 0.130 0.870 22 H 0.189 0.811 23 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.913 0.640 -2.204 2.470 hybrid contribution -0.513 -0.877 -0.525 1.144 sum -1.426 -0.237 -2.729 3.088 Atomic orbital electron populations 1.21498 0.79689 1.01960 1.01949 1.45918 1.06889 1.06280 1.67653 1.21824 0.91930 0.83543 0.76050 1.90592 1.71659 1.30435 1.52080 1.22804 0.89352 0.91794 0.99230 1.85973 1.60983 1.14146 1.62294 1.23132 0.90855 0.86176 1.25068 1.17849 0.89558 0.82809 1.00179 1.18663 1.13772 0.89196 1.28369 0.90610 1.25632 0.94518 1.00657 0.93354 1.69883 1.26187 1.28644 1.17831 0.86179 0.79234 0.80875 0.79893 1.18728 1.19768 1.20164 0.90918 0.92227 0.91964 0.91459 0.86988 0.81133 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.88 9.91 59.85 0.59 2.48 14 2 N -0.54 -13.14 3.12 -120.48 -0.38 -13.51 14 3 C 0.48 11.25 7.68 -10.79 -0.08 11.16 14 4 O -0.57 -13.87 16.52 5.55 0.09 -13.78 14 5 C 0.05 1.00 7.19 36.08 0.26 1.26 14 6 O -0.32 -7.82 10.47 -17.41 -0.18 -8.00 14 7 C -0.19 -4.91 9.86 30.65 0.30 -4.61 14 8 C 0.19 4.91 6.22 -83.40 -0.52 4.39 14 9 C -0.47 -11.95 8.35 -38.28 -0.32 -12.27 14 10 H 0.08 1.86 7.06 -52.49 -0.37 1.49 14 11 C 0.07 1.83 5.11 -17.30 -0.09 1.74 14 12 N -0.80 -20.38 11.02 55.55 0.61 -19.77 14 13 Si 0.91 18.32 29.60 -169.99 -5.03 13.29 14 14 H -0.26 -5.24 7.11 56.52 0.40 -4.83 14 15 H -0.27 -5.40 7.11 56.52 0.40 -4.99 14 16 H -0.28 -5.48 7.11 56.52 0.40 -5.08 14 17 H 0.07 1.42 6.96 -51.93 -0.36 1.06 14 18 H 0.06 1.13 7.42 -51.93 -0.39 0.75 14 19 H 0.06 1.24 8.14 -51.93 -0.42 0.82 14 20 H 0.07 1.28 8.14 -51.93 -0.42 0.86 14 21 H 0.11 2.03 8.14 -51.93 -0.42 1.60 14 22 H 0.17 4.64 6.17 -52.49 -0.32 4.32 14 23 H 0.28 6.48 8.30 -40.82 -0.34 6.14 14 LS Contribution 206.69 15.07 3.11 3.11 Total: -1.00 -28.91 206.69 -3.47 -32.38 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -1.84 Total: 2.13 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 0.15 Total: 4.15 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.24 Total: -33.28 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.09 Total: -21.78 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -28.91 -3.47 -32.38 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125537.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.572 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds