Wall clock time and date at job start Mon Mar 30 2020 02:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35136 * 116.99801 * 2 1 4 4 O 1.34574 * 126.83911 * 0.17562 * 3 2 1 5 5 C 1.34242 * 108.38742 * 180.24462 * 4 3 2 6 6 C 1.50697 * 124.97533 * 179.78101 * 5 4 3 7 7 N 1.29908 * 110.04977 * 359.74989 * 5 4 3 8 8 C 1.36254 * 108.72416 * 359.97438 * 7 5 4 9 9 C 1.40906 * 126.74326 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00395 * 180.02562 * 9 8 7 11 11 C 1.39584 * 119.99833 * 359.74237 * 9 8 7 12 12 N 1.31164 * 119.99939 * 0.28712 * 11 9 8 13 13 Si 1.86803 * 119.99975 * 180.27646 * 11 9 8 14 14 H 1.48498 * 109.46867 * 90.00572 * 13 11 9 15 15 H 1.48501 * 109.47216 * 210.00429 * 13 11 9 16 16 H 1.48499 * 109.47135 * 330.00770 * 13 11 9 17 17 H 1.09006 * 109.46743 * 179.97438 * 1 2 3 18 18 H 1.09000 * 109.46960 * 299.99480 * 1 2 3 19 19 H 1.08997 * 109.47106 * 59.99895 * 1 2 3 20 20 H 1.09002 * 109.47104 * 269.95859 * 6 5 4 21 21 H 1.08994 * 109.47514 * 29.95944 * 6 5 4 22 22 H 1.08999 * 109.47208 * 149.95950 * 6 5 4 23 23 H 0.96996 * 120.00182 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0425 1.2041 0.0000 4 8 1.4491 2.4119 0.0033 5 6 2.4058 3.3537 -0.0034 6 6 2.1551 4.8397 -0.0072 7 7 3.5793 2.7965 -0.0055 8 6 3.4209 1.4432 0.0005 9 6 4.4444 0.4747 0.0001 10 1 4.1938 -0.5758 0.0048 11 6 5.7821 0.8731 -0.0125 12 7 6.0864 2.1489 -0.0182 13 14 7.1389 -0.4108 -0.0208 14 1 7.4865 -0.7546 -1.4231 15 1 8.3378 0.1314 0.6676 16 1 6.6711 -1.6300 0.6863 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 2.0914 5.1948 -1.0358 21 1 1.2187 5.0516 0.5089 22 1 2.9738 5.3476 0.5024 23 1 7.0160 2.4258 -0.0265 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260195940.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:21 Heat of formation + Delta-G solvation = -23.263284 kcal Electronic energy + Delta-G solvation = -10946.410794 eV Core-core repulsion = 8761.924057 eV Total energy + Delta-G solvation = -2184.486737 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.18477 -37.11307 -34.04415 -32.23815 -30.50775 -27.47854 -26.43475 -23.87885 -20.72495 -19.61785 -17.39924 -16.72946 -15.67150 -14.86354 -14.31509 -14.06020 -13.96480 -12.61226 -12.32849 -12.26836 -11.82297 -11.29574 -11.16914 -10.90753 -10.44800 -10.25429 -10.00022 -9.87035 -8.71966 -8.68642 -6.82644 -6.35165 -4.05351 2.96192 3.22609 3.24756 3.28541 3.79705 4.16849 4.33447 4.62019 5.54106 5.55046 5.71817 5.76306 5.91850 6.03476 6.10000 6.35608 6.91553 7.30175 7.55505 7.69317 8.33668 8.49214 8.94894 9.10280 9.70562 10.60194 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.041624 B = 0.015702 C = 0.011497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.526945 B = 1782.750430 C = 2434.820973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.258 6.258 3 C -0.077 4.077 4 O -0.251 6.251 5 C 0.118 3.882 6 C -0.036 4.036 7 N -0.420 5.420 8 C 0.184 3.816 9 C -0.438 4.438 10 H 0.084 0.916 11 C 0.072 3.928 12 N -0.771 5.771 13 Si 0.911 3.089 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.264 1.264 17 H 0.087 0.913 18 H 0.040 0.960 19 H 0.040 0.960 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.088 0.912 23 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 0.861 0.025 5.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.173 6.173 3 C -0.170 4.170 4 O -0.145 6.145 5 C -0.087 4.087 6 C -0.093 4.093 7 N -0.155 5.155 8 C 0.066 3.934 9 C -0.471 4.471 10 H 0.102 0.898 11 C -0.147 4.147 12 N -0.397 5.397 13 Si 0.736 3.264 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.188 1.188 17 H 0.105 0.895 18 H 0.059 0.941 19 H 0.059 0.941 20 H 0.090 0.910 21 H 0.085 0.915 22 H 0.107 0.893 23 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.543 1.196 0.026 4.698 hybrid contribution -0.415 -0.914 -0.022 1.004 sum -4.958 0.282 0.004 4.966 Atomic orbital electron populations 1.22642 0.80994 1.02046 1.00430 1.86147 1.19016 1.19855 1.92297 1.21324 0.89719 0.76585 1.29333 1.83809 1.39744 1.15705 1.75217 1.25459 0.82409 0.92317 1.08558 1.19856 1.02491 0.84356 1.02630 1.71367 1.20905 1.06572 1.16697 1.18532 0.86705 0.88837 0.99329 1.18420 0.88798 0.92758 1.47154 0.89759 1.25833 0.99673 0.95813 0.93382 1.70143 1.19047 1.15240 1.35273 0.86284 0.79941 0.81295 0.78896 1.19736 1.20464 1.18809 0.89466 0.94083 0.94085 0.90996 0.91494 0.89336 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.80 101.05 1.09 1.73 14 2 O -0.26 -6.38 10.53 -40.17 -0.42 -6.80 14 3 C -0.08 -2.13 8.04 31.35 0.25 -1.88 14 4 O -0.25 -6.41 10.29 -17.93 -0.18 -6.60 14 5 C 0.12 2.91 8.25 -13.09 -0.11 2.80 14 6 C -0.04 -0.62 10.51 36.00 0.38 -0.24 14 7 N -0.42 -12.14 9.56 -8.43 -0.08 -12.22 14 8 C 0.18 5.52 6.72 -84.27 -0.57 4.96 14 9 C -0.44 -12.99 9.36 -38.07 -0.36 -13.35 14 10 H 0.08 2.41 7.84 -52.49 -0.41 2.00 14 11 C 0.07 1.99 5.49 -17.33 -0.10 1.89 14 12 N -0.77 -22.11 11.96 55.53 0.66 -21.44 14 13 Si 0.91 20.33 29.56 -169.99 -5.02 15.30 14 14 H -0.27 -5.95 7.11 56.52 0.40 -5.55 14 15 H -0.28 -6.04 7.11 56.52 0.40 -5.64 14 16 H -0.26 -5.79 7.11 56.52 0.40 -5.39 14 17 H 0.09 1.24 8.14 -51.93 -0.42 0.82 14 18 H 0.04 0.71 8.14 -51.93 -0.42 0.29 14 19 H 0.04 0.71 8.14 -51.93 -0.42 0.28 14 20 H 0.07 1.11 8.14 -51.93 -0.42 0.68 14 21 H 0.07 0.97 8.14 -51.93 -0.42 0.55 14 22 H 0.09 1.46 8.14 -51.93 -0.42 1.04 14 23 H 0.27 7.04 8.30 -40.82 -0.34 6.71 14 LS Contribution 217.38 15.07 3.28 3.28 Total: -1.00 -33.53 217.38 -3.26 -36.79 By element: Atomic # 1 Polarization: -2.13 SS G_CDS: -2.08 Total: -4.21 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 0.60 Total: -4.09 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.58 Total: -33.67 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.61 Total: -13.40 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -33.53 -3.26 -36.79 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260195940.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.531 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds