Wall clock time and date at job start Mon Mar 30 2020 01:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.26974 * 125.11553 * 2 1 4 4 N 1.39710 * 114.53679 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.85107 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.46832 * 179.88780 * 5 4 3 7 7 C 1.52996 * 109.47234 * 299.88713 * 5 4 3 8 8 C 1.50705 * 109.47316 * 59.89316 * 5 4 3 9 9 H 1.07995 * 119.99809 * 359.97438 * 8 5 4 10 10 C 1.37877 * 120.00024 * 179.97438 * 8 5 4 11 11 N 1.31513 * 119.99831 * 359.97438 * 10 8 5 12 12 Si 1.86794 * 119.99776 * 179.97438 * 10 8 5 13 13 H 1.48492 * 109.47389 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46768 * 120.00071 * 12 10 8 15 15 H 1.48500 * 109.47133 * 240.00020 * 12 10 8 16 16 C 1.47239 * 108.49359 * 359.84504 * 4 3 2 17 17 C 1.51202 * 125.12030 * 179.97438 * 2 1 3 18 18 H 1.09005 * 109.47100 * 270.02770 * 1 2 3 19 19 H 1.09009 * 109.47000 * 30.02337 * 1 2 3 20 20 H 1.08996 * 109.47482 * 150.02706 * 1 2 3 21 21 H 1.09003 * 109.47337 * 180.02562 * 7 5 4 22 22 H 1.09005 * 109.47285 * 300.00394 * 7 5 4 23 23 H 1.09001 * 109.46772 * 60.00483 * 7 5 4 24 24 H 0.97002 * 119.99803 * 180.02562 * 11 10 8 25 25 H 1.09002 * 110.66417 * 241.61237 * 16 4 3 26 26 H 1.08998 * 110.65876 * 118.66236 * 16 4 3 27 27 H 1.09013 * 110.55692 * 61.44073 * 17 2 1 28 28 H 1.09001 * 110.55894 * 298.60300 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2374 1.0386 0.0000 4 7 3.6108 0.7822 -0.0006 5 6 4.6722 1.7919 -0.0012 6 1 5.6438 1.2977 0.0004 7 6 4.5457 2.6639 -1.2519 8 6 4.5455 2.6548 1.2278 9 1 3.7533 2.4698 1.9381 10 6 5.4410 3.6803 1.4454 11 7 6.4059 3.9052 0.5807 12 14 5.2835 4.7503 2.9685 13 1 4.1241 4.2939 3.7763 14 1 6.5234 4.6435 3.7787 15 1 5.0782 6.1636 2.5615 16 6 3.8135 -0.6762 0.0028 17 6 2.3769 -1.2368 0.0006 18 1 -0.3633 0.0005 1.0277 19 1 -0.3633 0.8899 -0.5142 20 1 -0.3634 -0.8902 -0.5134 21 1 5.3358 3.4150 -1.2527 22 1 4.6374 2.0398 -2.1409 23 1 3.5742 3.1581 -1.2535 24 1 7.0362 4.6265 0.7340 25 1 4.3475 -0.9883 0.9003 26 1 4.3502 -0.9919 -0.8919 27 1 2.1979 -1.8310 -0.8957 28 1 2.1974 -1.8305 0.8969 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260227680.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:19 Heat of formation + Delta-G solvation = 47.505647 kcal Electronic energy + Delta-G solvation = -11046.270845 eV Core-core repulsion = 9098.404635 eV Total energy + Delta-G solvation = -1947.866210 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.72767 -34.30090 -31.80689 -30.09319 -29.14026 -26.24781 -25.08184 -22.01989 -20.43493 -18.14853 -16.25477 -15.30714 -15.08935 -14.18813 -13.75734 -12.88058 -12.70929 -12.57552 -12.15870 -11.63699 -11.31421 -11.15210 -10.94045 -10.89700 -10.52813 -10.22250 -10.14804 -10.00508 -9.28584 -8.89223 -8.39486 -6.58034 -5.98578 -4.06361 3.17201 3.30839 3.38246 3.44644 3.92048 4.45779 5.09240 5.22082 5.29334 5.52210 5.61361 5.91838 6.00218 6.06056 6.16830 6.38757 6.44288 6.80522 7.00439 7.14127 7.22057 7.60949 7.88578 7.99958 8.33744 8.52552 8.98675 9.25358 9.60427 11.03631 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.052504 B = 0.011976 C = 0.010994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.167171 B = 2337.408105 C = 2546.278369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.032 4.032 3 N -0.191 5.191 4 N -0.523 5.523 5 C 0.316 3.684 6 H 0.046 0.954 7 C -0.146 4.146 8 C -0.511 4.511 9 H 0.060 0.940 10 C 0.059 3.941 11 N -0.897 5.897 12 Si 0.899 3.101 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.087 3.913 17 C -0.118 4.118 18 H 0.064 0.936 19 H 0.066 0.934 20 H 0.064 0.936 21 H 0.090 0.910 22 H 0.007 0.993 23 H 0.036 0.964 24 H 0.261 0.739 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.554 -7.618 -1.282 10.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.227 4.227 3 N 0.000 5.000 4 N -0.341 5.341 5 C 0.217 3.783 6 H 0.064 0.936 7 C -0.205 4.205 8 C -0.550 4.550 9 H 0.079 0.921 10 C -0.142 4.142 11 N -0.537 5.537 12 Si 0.727 3.273 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.209 1.209 16 C -0.038 4.038 17 C -0.158 4.158 18 H 0.082 0.918 19 H 0.085 0.915 20 H 0.083 0.917 21 H 0.109 0.891 22 H 0.026 0.974 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.131 -6.377 -1.310 8.943 hybrid contribution 0.238 -0.322 0.826 0.918 sum -5.893 -6.699 -0.484 8.935 Atomic orbital electron populations 1.19959 0.87661 1.02113 1.01834 1.24390 0.96200 0.90823 1.11240 1.73459 0.93374 1.28119 1.05001 1.51801 0.98766 1.02619 1.80934 1.18521 0.81773 0.83883 0.94171 0.93634 1.22102 1.02150 1.00714 0.95509 1.21540 1.13097 1.14155 1.06221 0.92127 1.24918 0.95172 0.97201 0.96930 1.69882 1.16556 1.31744 1.35482 0.86415 0.77843 0.80204 0.82822 1.19848 1.21064 1.20920 1.22327 0.96093 0.85005 1.00394 1.22050 0.93515 0.98151 1.02057 0.91775 0.91487 0.91730 0.89114 0.97441 0.94515 0.92877 0.92421 0.92730 0.90727 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.48 36.01 0.38 -0.39 15 2 C -0.03 -0.58 7.43 -79.08 -0.59 -1.17 15 3 N -0.19 -4.40 11.81 34.78 0.41 -3.99 15 4 N -0.52 -12.53 3.61 -107.28 -0.39 -12.92 15 5 C 0.32 8.44 3.14 -69.08 -0.22 8.22 15 6 H 0.05 1.27 8.10 -51.92 -0.42 0.85 15 7 C -0.15 -3.79 9.22 37.16 0.34 -3.44 15 8 C -0.51 -14.78 8.76 -34.44 -0.30 -15.08 15 9 H 0.06 1.83 7.81 -52.49 -0.41 1.42 15 10 C 0.06 1.66 5.30 -17.82 -0.09 1.57 15 11 N -0.90 -25.82 11.32 55.43 0.63 -25.19 15 12 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 15 13 H -0.27 -6.74 7.11 56.52 0.40 -6.34 15 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 16 C 0.09 1.68 7.76 -3.00 -0.02 1.66 15 17 C -0.12 -1.88 6.97 -27.00 -0.19 -2.07 15 18 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 19 H 0.07 0.91 8.14 -51.92 -0.42 0.48 15 20 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.09 2.49 6.07 -51.93 -0.32 2.18 15 22 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 15 23 H 0.04 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 27 H 0.07 1.02 8.14 -51.92 -0.42 0.60 15 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 LS Contribution 240.25 15.07 3.62 3.62 Total: -1.00 -30.82 240.25 -5.53 -36.35 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -4.09 Total: -4.17 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -0.69 Total: -10.70 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.65 Total: -42.10 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.82 -5.53 -36.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227680.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.857 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds