Wall clock time and date at job start Mon Mar 30 2020 01:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.26974 * 125.11553 * 2 1 4 4 N 1.39710 * 114.53679 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.85107 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.46832 * 179.88780 * 5 4 3 7 7 C 1.52996 * 109.47234 * 299.88713 * 5 4 3 8 8 C 1.50705 * 109.47316 * 59.89316 * 5 4 3 9 9 H 1.07995 * 119.99809 * 359.97438 * 8 5 4 10 10 C 1.37877 * 120.00024 * 179.97438 * 8 5 4 11 11 N 1.31513 * 119.99831 * 359.97438 * 10 8 5 12 12 Si 1.86794 * 119.99776 * 179.97438 * 10 8 5 13 13 H 1.48492 * 109.47389 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46768 * 120.00071 * 12 10 8 15 15 H 1.48500 * 109.47133 * 240.00020 * 12 10 8 16 16 C 1.47239 * 108.49359 * 359.84504 * 4 3 2 17 17 C 1.51202 * 125.12030 * 179.97438 * 2 1 3 18 18 H 1.09005 * 109.47100 * 270.02770 * 1 2 3 19 19 H 1.09009 * 109.47000 * 30.02337 * 1 2 3 20 20 H 1.08996 * 109.47482 * 150.02706 * 1 2 3 21 21 H 1.09003 * 109.47337 * 180.02562 * 7 5 4 22 22 H 1.09005 * 109.47285 * 300.00394 * 7 5 4 23 23 H 1.09001 * 109.46772 * 60.00483 * 7 5 4 24 24 H 0.97002 * 119.99803 * 180.02562 * 11 10 8 25 25 H 1.09002 * 110.66417 * 241.61237 * 16 4 3 26 26 H 1.08998 * 110.65876 * 118.66236 * 16 4 3 27 27 H 1.09013 * 110.55692 * 61.44073 * 17 2 1 28 28 H 1.09001 * 110.55894 * 298.60300 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2374 1.0386 0.0000 4 7 3.6108 0.7822 -0.0006 5 6 4.6722 1.7919 -0.0012 6 1 5.6438 1.2977 0.0004 7 6 4.5457 2.6639 -1.2519 8 6 4.5455 2.6548 1.2278 9 1 3.7533 2.4698 1.9381 10 6 5.4410 3.6803 1.4454 11 7 6.4059 3.9052 0.5807 12 14 5.2835 4.7503 2.9685 13 1 4.1241 4.2939 3.7763 14 1 6.5234 4.6435 3.7787 15 1 5.0782 6.1636 2.5615 16 6 3.8135 -0.6762 0.0028 17 6 2.3769 -1.2368 0.0006 18 1 -0.3633 0.0005 1.0277 19 1 -0.3633 0.8899 -0.5142 20 1 -0.3634 -0.8902 -0.5134 21 1 5.3358 3.4150 -1.2527 22 1 4.6374 2.0398 -2.1409 23 1 3.5742 3.1581 -1.2535 24 1 7.0362 4.6265 0.7340 25 1 4.3475 -0.9883 0.9003 26 1 4.3502 -0.9919 -0.8919 27 1 2.1979 -1.8310 -0.8957 28 1 2.1974 -1.8305 0.8969 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260227680.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:19 Heat of formation + Delta-G solvation = 27.430841 kcal Electronic energy + Delta-G solvation = -11047.141354 eV Core-core repulsion = 9098.404635 eV Total energy + Delta-G solvation = -1948.736719 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.25601 -36.29481 -33.62843 -31.69802 -30.67652 -27.76929 -27.25215 -23.63811 -22.21610 -19.74950 -18.27527 -17.22870 -16.52292 -16.04994 -15.33697 -14.59375 -14.28936 -14.00333 -13.63930 -13.26047 -13.14724 -12.89684 -12.53725 -12.46505 -12.34997 -12.21164 -12.05102 -11.88450 -11.14231 -10.68383 -10.49471 -8.37665 -8.02127 -6.29900 1.36719 1.38153 1.50590 1.73357 2.26708 2.44266 3.09231 3.71779 3.87993 4.22655 4.27157 4.66724 4.70662 4.85269 4.90902 4.93461 5.06115 5.07142 5.11245 5.24615 5.42761 5.61398 5.84042 5.98565 6.28258 6.56799 6.93830 7.41304 7.67488 8.87461 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.052504 B = 0.011976 C = 0.010994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.167171 B = 2337.408105 C = 2546.278369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.000 4.000 3 N -0.263 5.263 4 N -0.554 5.554 5 C 0.320 3.680 6 H 0.024 0.976 7 C -0.128 4.128 8 C -0.531 4.531 9 H 0.039 0.961 10 C 0.016 3.984 11 N -0.917 5.917 12 Si 0.962 3.038 13 H -0.278 1.278 14 H -0.273 1.273 15 H -0.275 1.275 16 C 0.079 3.921 17 C -0.112 4.112 18 H 0.080 0.920 19 H 0.063 0.937 20 H 0.103 0.897 21 H 0.071 0.929 22 H 0.021 0.979 23 H 0.022 0.978 24 H 0.266 0.734 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 -8.767 -0.962 11.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.196 4.196 3 N -0.069 5.069 4 N -0.373 5.373 5 C 0.219 3.781 6 H 0.042 0.958 7 C -0.187 4.187 8 C -0.570 4.570 9 H 0.057 0.943 10 C -0.183 4.183 11 N -0.557 5.557 12 Si 0.788 3.212 13 H -0.203 1.203 14 H -0.198 1.198 15 H -0.201 1.201 16 C -0.046 4.046 17 C -0.152 4.152 18 H 0.099 0.901 19 H 0.082 0.918 20 H 0.122 0.878 21 H 0.090 0.910 22 H 0.040 0.960 23 H 0.041 0.959 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.127 0.873 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.579 -7.540 -0.998 10.738 hybrid contribution 0.567 -0.083 0.707 0.910 sum -7.013 -7.623 -0.291 10.362 Atomic orbital electron populations 1.20213 0.84132 1.03940 1.03430 1.25488 0.98209 0.90883 1.05035 1.73480 0.93138 1.30622 1.09632 1.51493 0.98996 1.03571 1.83190 1.18116 0.82213 0.84356 0.93446 0.95814 1.21877 1.00390 1.00246 0.96199 1.21658 1.12904 1.15441 1.06993 0.94275 1.25668 0.94720 0.98181 0.99758 1.69972 1.16856 1.32143 1.36727 0.85446 0.77892 0.78556 0.79335 1.20290 1.19821 1.20051 1.22542 0.98618 0.82958 1.00506 1.22157 0.90494 0.97543 1.04976 0.90133 0.91790 0.87810 0.91021 0.95989 0.95890 0.92447 0.93060 0.91981 0.87260 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.35 10.48 71.24 0.75 -0.60 15 2 C 0.00 -0.02 7.43 46.84 0.35 0.33 15 3 N -0.26 -12.01 11.81 -41.38 -0.49 -12.50 15 4 N -0.55 -26.91 3.61 -493.34 -1.78 -28.69 15 5 C 0.32 17.67 3.14 44.25 0.14 17.81 15 6 H 0.02 1.39 8.10 -2.38 -0.02 1.37 15 7 C -0.13 -6.85 9.22 71.98 0.66 -6.19 15 8 C -0.53 -31.62 8.76 25.60 0.22 -31.39 15 9 H 0.04 2.44 7.81 -2.91 -0.02 2.41 15 10 C 0.02 0.90 5.30 84.65 0.45 1.35 15 11 N -0.92 -53.59 11.32 21.45 0.24 -53.35 15 12 Si 0.96 45.60 29.54 68.60 2.03 47.62 15 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 15 14 H -0.27 -12.35 7.11 99.48 0.71 -11.64 15 15 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 16 C 0.08 2.96 7.76 86.65 0.67 3.63 15 17 C -0.11 -3.20 6.97 30.42 0.21 -2.98 15 18 H 0.08 1.68 8.14 -2.38 -0.02 1.66 15 19 H 0.06 1.55 8.14 -2.38 -0.02 1.53 15 20 H 0.10 1.63 8.14 -2.39 -0.02 1.61 15 21 H 0.07 4.05 6.07 -2.39 -0.01 4.04 15 22 H 0.02 1.04 8.14 -2.38 -0.02 1.02 15 23 H 0.02 1.22 8.14 -2.39 -0.02 1.20 15 24 H 0.27 14.59 8.31 -92.71 -0.77 13.82 15 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 15 26 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 27 H 0.11 2.45 8.14 -2.38 -0.02 2.43 15 28 H 0.10 2.43 8.14 -2.39 -0.02 2.41 15 Total: -1.00 -68.06 240.25 4.57 -63.49 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: 1.12 Total: 1.48 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 3.46 Total: -18.05 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -2.03 Total: -94.54 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -68.06 4.57 -63.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227680.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.916 kcal (2) G-P(sol) polarization free energy of solvation -68.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds