Wall clock time and date at job start Mon Mar 30 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 13 13 C 1.36065 * 126.46779 * 265.00117 * 12 2 1 14 14 C 1.41140 * 104.20155 * 180.02562 * 13 12 2 15 15 O 1.22006 * 126.98645 * 180.02562 * 14 13 12 16 16 O 1.34199 * 106.02632 * 359.97438 * 14 13 12 17 17 N 1.20966 * 110.91282 * 359.70347 * 16 14 13 18 18 H 0.97001 * 124.10460 * 180.27895 * 17 16 14 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 21 21 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 22 22 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 23 23 H 1.08007 * 127.89918 * 0.02562 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 6 2.0323 -0.7104 1.2305 13 6 2.3918 -0.1317 2.4083 14 6 2.7839 -1.2166 3.2216 15 8 3.1844 -1.1637 4.3728 16 8 2.6254 -2.3181 2.4717 17 7 2.2040 -2.0359 1.3735 18 1 2.0163 -2.6867 0.6792 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3635 0.5138 -0.8899 22 1 0.7092 1.1618 -3.4843 23 1 2.3799 0.9179 2.6627 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260261062.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:38 Heat of formation + Delta-G solvation = -3.107347 kcal Electronic energy + Delta-G solvation = -10942.152197 eV Core-core repulsion = 8758.539487 eV Total energy + Delta-G solvation = -2183.612710 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -45.97629 -38.92355 -37.38322 -34.59070 -32.07191 -31.71434 -27.29673 -24.75609 -24.09578 -21.67781 -20.25830 -18.98184 -18.26755 -17.16928 -16.50947 -15.90148 -15.00819 -14.73512 -14.46562 -14.43265 -13.68882 -13.05041 -12.82121 -12.53765 -12.22543 -11.96041 -11.46427 -11.24109 -10.95803 -10.51497 -9.17260 -8.17094 -6.34270 0.46366 1.30610 1.47788 1.50860 1.55871 1.79678 2.41549 2.62328 3.14801 3.77857 4.32818 4.38921 4.85118 5.01810 5.07447 5.12189 5.48154 5.69026 5.88088 5.95030 6.12983 6.56647 6.71172 7.01467 7.37093 8.87542 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.070369 B = 0.011606 C = 0.010602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.806356 B = 2412.019870 C = 2640.313290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.088 3.912 3 H 0.047 0.953 4 C -0.548 4.548 5 H 0.069 0.931 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 0.955 3.045 9 H -0.266 1.266 10 H -0.289 1.289 11 H -0.276 1.276 12 C 0.215 3.785 13 C -0.415 4.415 14 C 0.446 3.554 15 O -0.551 6.551 16 O -0.068 6.068 17 N -0.479 5.479 18 H 0.477 0.523 19 H 0.040 0.960 20 H 0.036 0.964 21 H 0.074 0.926 22 H 0.266 0.734 23 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 -4.089 0.310 4.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.069 3.931 3 H 0.065 0.935 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.172 4.172 7 N -0.543 5.543 8 Si 0.781 3.219 9 H -0.190 1.190 10 H -0.215 1.215 11 H -0.202 1.202 12 C 0.095 3.905 13 C -0.443 4.443 14 C 0.304 3.696 15 O -0.448 6.448 16 O -0.091 6.091 17 N -0.138 5.138 18 H 0.332 0.668 19 H 0.059 0.941 20 H 0.055 0.945 21 H 0.093 0.907 22 H 0.076 0.924 23 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.447 -4.364 0.752 4.451 hybrid contribution 0.266 -0.344 -1.017 1.106 sum -0.181 -4.708 -0.265 4.719 Atomic orbital electron populations 1.21672 0.95053 1.00445 1.01341 1.17773 0.94317 0.95181 0.85859 0.93497 1.21239 1.32954 1.13807 0.90595 0.91335 1.25580 0.94623 0.95364 1.01674 1.69951 1.36278 1.23327 1.24748 0.85645 0.78555 0.79009 0.78673 1.19038 1.21466 1.20161 1.22606 0.87209 0.83457 0.97274 1.22330 1.25138 1.01509 0.95282 1.19945 0.80874 0.82092 0.86686 1.90952 1.53835 1.83777 1.16236 1.84492 1.72211 1.37174 1.15183 1.41306 1.59358 1.08524 1.04638 0.66841 0.94099 0.94476 0.90746 0.92422 0.80170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 8.95 71.98 0.64 -4.44 14 2 C 0.09 3.69 2.70 -12.29 -0.03 3.66 14 3 H 0.05 2.17 8.14 -2.39 -0.02 2.15 14 4 C -0.55 -24.62 8.30 25.60 0.21 -24.40 14 5 H 0.07 2.86 7.07 -2.91 -0.02 2.84 14 6 C 0.03 1.37 5.30 84.65 0.45 1.82 14 7 N -0.91 -45.26 11.32 21.45 0.24 -45.01 14 8 Si 0.96 37.65 29.54 68.60 2.03 39.68 14 9 H -0.27 -9.99 7.11 99.48 0.71 -9.28 14 10 H -0.29 -11.55 7.11 99.48 0.71 -10.84 14 11 H -0.28 -10.88 7.11 99.48 0.71 -10.18 14 12 C 0.22 8.03 5.90 41.66 0.25 8.28 14 13 C -0.41 -15.83 11.08 22.48 0.25 -15.58 14 14 C 0.45 18.19 8.67 68.53 0.59 18.78 14 15 O -0.55 -25.63 18.07 17.74 0.32 -25.31 14 16 O -0.07 -2.40 11.25 93.14 1.05 -1.35 14 17 N -0.48 -15.65 6.40 -48.08 -0.31 -15.96 14 18 H 0.48 12.79 8.26 -92.71 -0.77 12.03 14 19 H 0.04 1.51 8.14 -2.39 -0.02 1.49 14 20 H 0.04 1.33 8.14 -2.39 -0.02 1.31 14 21 H 0.07 3.36 6.07 -2.39 -0.01 3.34 14 22 H 0.27 12.85 8.31 -92.71 -0.77 12.08 14 23 H 0.18 6.39 8.06 -2.91 -0.02 6.37 14 Total: -1.00 -54.68 211.01 6.16 -48.52 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.47 Total: 11.31 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 2.36 Total: -11.88 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.06 Total: -60.97 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: 1.37 Total: -26.66 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -54.68 6.16 -48.52 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260261062.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.415 kcal (2) G-P(sol) polarization free energy of solvation -54.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds