Wall clock time and date at job start Mon Mar 30 2020 02:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47624 * 2 1 4 4 C 1.50701 * 109.47123 * 120.00604 * 2 1 3 5 5 H 1.07998 * 120.00070 * 114.36777 * 4 2 1 6 6 C 1.37879 * 119.99995 * 294.36421 * 4 2 1 7 7 N 1.31508 * 119.99990 * 157.05770 * 6 4 2 8 8 Si 1.86804 * 119.99865 * 337.06609 * 6 4 2 9 9 H 1.48500 * 109.46831 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47153 * 59.99843 * 8 6 4 11 11 H 1.48500 * 109.47238 * 299.99498 * 8 6 4 12 12 C 1.50700 * 109.47125 * 240.00440 * 2 1 3 13 13 C 1.36064 * 126.46813 * 94.70948 * 12 2 1 14 14 C 1.41139 * 104.20104 * 179.90468 * 13 12 2 15 15 O 1.22015 * 126.98529 * 180.08807 * 14 13 12 16 16 O 1.34191 * 106.02870 * 0.36274 * 14 13 12 17 17 N 1.20962 * 110.91208 * 359.76304 * 16 14 13 18 18 H 0.97002 * 124.10618 * 179.97438 * 17 16 14 19 19 H 1.08996 * 109.47351 * 173.16972 * 1 2 3 20 20 H 1.09004 * 109.46856 * 293.17011 * 1 2 3 21 21 H 1.09006 * 109.47234 * 53.16777 * 1 2 3 22 22 H 0.96993 * 120.00257 * 354.93792 * 7 6 4 23 23 H 1.08007 * 127.90429 * 359.97438 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5761 -1.6386 1.1338 6 6 1.7976 -0.1758 2.4794 7 7 1.8112 -0.9526 3.5404 8 14 1.4603 1.6522 2.6644 9 1 1.2412 1.9725 4.0978 10 1 0.2482 2.0131 1.8861 11 1 2.6228 2.4241 2.1564 12 6 2.0323 -0.7103 -1.2305 13 6 2.3865 -0.1321 -2.4101 14 6 2.7827 -1.2164 -3.2221 15 8 3.1826 -1.1635 -4.3736 16 8 2.6242 -2.3180 -2.4723 17 7 2.2093 -2.0353 -1.3718 18 1 2.0261 -2.6857 -0.6759 19 1 -0.3634 -1.0203 -0.1222 20 1 -0.3633 0.4044 0.9448 21 1 -0.3634 0.6161 -0.8226 22 1 1.9130 -1.9117 3.4380 23 1 2.3697 0.9170 -2.6663 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260261083.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:39 Heat of formation + Delta-G solvation = -4.894838 kcal Electronic energy + Delta-G solvation = -10976.002518 eV Core-core repulsion = 8792.312296 eV Total energy + Delta-G solvation = -2183.690222 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.05690 -38.97648 -37.50706 -34.68329 -32.36087 -32.08614 -26.87487 -24.72934 -24.16284 -21.65741 -20.23203 -19.43974 -19.03299 -17.16647 -16.12823 -15.94769 -15.18064 -14.87503 -14.56784 -14.33722 -14.15298 -13.41806 -12.89192 -12.36306 -11.92770 -11.69266 -11.51209 -11.31065 -11.02799 -10.39924 -9.23383 -8.76579 -6.41247 0.39174 1.21647 1.57537 1.62792 1.74102 1.79700 2.53625 2.58585 3.02592 3.63687 4.18962 4.27876 4.62573 4.75585 4.91658 5.07132 5.22394 5.49420 5.78568 5.79292 6.03281 6.49268 6.52424 6.94049 7.33517 8.61679 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.070006 B = 0.012275 C = 0.011399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.869463 B = 2280.508571 C = 2455.751826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.061 3.939 3 H 0.071 0.929 4 C -0.624 4.624 5 H 0.040 0.960 6 C 0.003 3.997 7 N -0.923 5.923 8 Si 1.066 2.934 9 H -0.297 1.297 10 H -0.236 1.236 11 H -0.265 1.265 12 C 0.214 3.786 13 C -0.405 4.405 14 C 0.444 3.556 15 O -0.549 6.549 16 O -0.071 6.071 17 N -0.483 5.483 18 H 0.473 0.527 19 H 0.047 0.953 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.260 0.740 23 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.263 2.398 -4.696 6.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.041 3.959 3 H 0.089 0.911 4 C -0.661 4.661 5 H 0.058 0.942 6 C -0.199 4.199 7 N -0.557 5.557 8 Si 0.887 3.113 9 H -0.223 1.223 10 H -0.160 1.160 11 H -0.190 1.190 12 C 0.093 3.907 13 C -0.433 4.433 14 C 0.302 3.698 15 O -0.446 6.446 16 O -0.094 6.094 17 N -0.141 5.141 18 H 0.327 0.673 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.069 0.931 23 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.286 3.164 -4.162 6.175 hybrid contribution 0.579 -1.985 -0.612 2.156 sum -2.707 1.179 -4.774 5.613 Atomic orbital electron populations 1.22082 0.94470 1.01456 1.01803 1.18150 0.94579 0.96380 0.86781 0.91083 1.21936 1.41512 1.10558 0.92138 0.94177 1.26916 0.92215 1.09025 0.91751 1.70981 1.45338 1.06146 1.33192 0.83780 0.79543 0.71421 0.76510 1.22306 1.15973 1.19022 1.22350 0.87921 0.83353 0.97057 1.22414 1.24447 1.01798 0.94682 1.20053 0.80877 0.82138 0.86772 1.90963 1.53692 1.83704 1.16210 1.84506 1.72494 1.37521 1.14871 1.41326 1.59574 1.08843 1.04372 0.67310 0.93419 0.92304 0.91661 0.93102 0.79042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 8.90 71.98 0.64 -4.04 14 2 C 0.06 2.29 2.30 -12.29 -0.03 2.26 14 3 H 0.07 2.57 6.72 -2.39 -0.02 2.55 14 4 C -0.62 -28.84 8.57 25.60 0.22 -28.62 14 5 H 0.04 1.97 7.16 -2.91 -0.02 1.95 14 6 C 0.00 0.14 5.20 84.66 0.44 0.58 14 7 N -0.92 -50.79 13.70 21.45 0.29 -50.50 14 8 Si 1.07 42.29 26.44 68.60 1.81 44.11 14 9 H -0.30 -12.46 7.11 99.48 0.71 -11.75 14 10 H -0.24 -7.96 6.13 99.48 0.61 -7.35 14 11 H -0.27 -9.90 7.11 99.48 0.71 -9.20 14 12 C 0.21 7.59 5.91 41.66 0.25 7.83 14 13 C -0.41 -14.33 11.08 22.48 0.25 -14.08 14 14 C 0.44 17.58 8.67 68.53 0.59 18.17 14 15 O -0.55 -24.91 18.07 17.71 0.32 -24.59 14 16 O -0.07 -2.53 11.25 93.22 1.05 -1.48 14 17 N -0.48 -16.10 6.41 -48.08 -0.31 -16.41 14 18 H 0.47 13.99 8.15 -92.71 -0.76 13.24 14 19 H 0.05 1.55 8.13 -2.39 -0.02 1.53 14 20 H 0.06 2.05 5.45 -2.38 -0.01 2.04 14 21 H 0.06 1.81 8.14 -2.38 -0.02 1.79 14 22 H 0.26 14.34 8.73 -92.71 -0.81 13.53 14 23 H 0.19 5.88 8.06 -2.91 -0.02 5.86 14 Total: -1.00 -58.45 207.38 5.88 -52.57 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.35 Total: 14.19 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 2.36 Total: -17.89 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: -0.01 Total: -66.91 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: 1.37 Total: -26.07 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.81 Total: 44.11 kcal Total: -58.45 5.88 -52.57 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260261083.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.678 kcal (2) G-P(sol) polarization free energy of solvation -58.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds