Wall clock time and date at job start Mon Mar 30 2020 02:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99457 * 2 1 4 4 H 1.48497 * 109.47352 * 270.00346 * 3 2 1 5 5 H 1.48507 * 109.46988 * 30.00340 * 3 2 1 6 6 H 1.48500 * 109.46710 * 150.00136 * 3 2 1 7 7 C 1.37874 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99681 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00182 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46846 * 179.97438 * 10 9 7 12 12 C 1.36077 * 126.46430 * 274.99201 * 11 10 9 13 13 C 1.41139 * 104.19890 * 180.02562 * 12 11 10 14 14 O 1.22001 * 126.98787 * 180.02562 * 13 12 11 15 15 O 1.34200 * 106.02457 * 0.02562 * 13 12 11 16 16 N 1.20963 * 110.91590 * 359.97438 * 15 13 12 17 17 H 0.96998 * 124.10121 * 179.97438 * 16 15 13 18 18 H 0.96993 * 120.00560 * 359.97438 * 1 2 3 19 19 H 1.09003 * 109.47643 * 59.99812 * 9 7 2 20 20 H 1.09007 * 109.47269 * 299.99889 * 9 7 2 21 21 H 1.08997 * 109.47055 * 59.99838 * 10 9 7 22 22 H 1.08994 * 109.46878 * 299.99915 * 10 9 7 23 23 H 1.07995 * 127.90051 * 0.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0467 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2513 -2.4991 -0.0005 10 6 2.2456 -3.6620 -0.0005 11 6 1.4922 -4.9671 0.0001 12 6 1.0057 -5.6196 1.0907 13 6 0.3933 -6.7745 0.5585 14 8 -0.1779 -7.6551 1.1803 15 8 0.5671 -6.7070 -0.7705 16 7 1.1747 -5.7067 -1.0763 17 1 1.4053 -5.4678 -1.9877 18 1 -0.4850 0.8399 0.0004 19 1 0.6242 -2.5568 -0.8903 20 1 0.6249 -2.5571 0.8897 21 1 2.8723 -3.6041 0.8894 22 1 2.8722 -3.6041 -0.8905 23 1 1.0729 -5.3217 2.1266 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260311906.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:33 Heat of formation + Delta-G solvation = 9.720033 kcal Electronic energy + Delta-G solvation = -10558.678164 eV Core-core repulsion = 8375.621691 eV Total energy + Delta-G solvation = -2183.056473 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -44.70770 -37.49553 -35.56933 -33.12157 -30.87152 -30.44043 -25.78703 -23.09415 -21.97124 -20.47611 -19.04495 -17.70129 -16.53426 -15.60612 -14.83665 -14.61560 -13.59070 -13.27260 -13.01241 -12.90359 -12.43200 -11.61929 -11.08519 -10.89145 -10.40341 -10.28872 -9.85314 -9.56044 -9.34000 -8.53190 -7.88299 -6.17083 -4.22565 1.66812 2.44572 3.15360 3.22231 3.29882 3.32039 3.84731 4.31911 4.92945 5.19244 5.40648 5.52845 6.11862 6.15162 6.39279 6.51086 6.95120 7.39357 7.48887 7.78400 7.93393 8.14408 8.21301 8.83410 9.43313 10.93719 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.098390 B = 0.008166 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.512547 B = 3428.217469 C = 3490.806109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.028 3.972 10 C -0.065 4.065 11 C 0.179 3.821 12 C -0.387 4.387 13 C 0.458 3.542 14 O -0.506 6.506 15 O -0.076 6.076 16 N -0.504 5.504 17 H 0.461 0.539 18 H 0.264 0.736 19 H 0.019 0.981 20 H 0.028 0.972 21 H 0.094 0.906 22 H 0.074 0.926 23 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.664 -5.854 -2.942 8.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.103 4.103 11 C 0.062 3.938 12 C -0.415 4.415 13 C 0.313 3.687 14 O -0.399 6.399 15 O -0.100 6.100 16 N -0.164 5.164 17 H 0.311 0.689 18 H 0.073 0.927 19 H 0.038 0.962 20 H 0.047 0.953 21 H 0.112 0.888 22 H 0.092 0.908 23 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.129 -6.391 -2.935 8.156 hybrid contribution 0.400 1.058 -0.341 1.181 sum 4.530 -5.334 -3.277 7.727 Atomic orbital electron populations 1.69955 1.06132 1.27068 1.49682 1.25023 0.94871 0.99471 0.94883 0.86529 0.79827 0.83106 0.78171 1.20593 1.21098 1.19718 1.21113 0.93124 0.90454 1.52147 0.92201 1.19138 0.93469 0.89946 0.98409 1.20862 0.98550 0.87289 1.03638 1.22559 0.91628 0.93418 0.86190 1.22285 1.17880 1.00354 1.00983 1.19873 0.82229 0.88827 0.77792 1.91010 1.47393 1.42831 1.58633 1.84530 1.63288 1.29587 1.32546 1.41072 1.51382 1.13750 1.10163 0.68883 0.92678 0.96247 0.95333 0.88792 0.90780 0.80618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 13.29 55.43 0.74 -24.55 14 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 14 3 Si 0.90 20.26 29.54 -169.99 -5.02 15.23 14 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 14 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 14 6 H -0.27 -6.01 7.11 56.52 0.40 -5.60 14 7 C -0.53 -13.53 9.11 -34.45 -0.31 -13.84 14 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 14 9 C 0.03 0.63 4.95 -27.89 -0.14 0.50 14 10 C -0.07 -1.09 5.71 -27.88 -0.16 -1.25 14 11 C 0.18 2.83 6.49 -82.24 -0.53 2.30 14 12 C -0.39 -6.71 11.08 -39.26 -0.44 -7.14 14 13 C 0.46 8.63 8.67 31.83 0.28 8.90 14 14 O -0.51 -11.06 18.07 -19.22 -0.35 -11.40 14 15 O -0.08 -1.23 11.25 -7.39 -0.08 -1.31 14 16 N -0.50 -6.88 6.70 33.48 0.22 -6.66 14 17 H 0.46 4.43 8.96 -40.82 -0.37 4.07 14 18 H 0.26 7.10 8.31 -40.82 -0.34 6.76 14 19 H 0.02 0.46 8.14 -51.93 -0.42 0.04 14 20 H 0.03 0.71 8.14 -51.92 -0.42 0.29 14 21 H 0.09 1.50 8.14 -51.93 -0.42 1.08 14 22 H 0.07 1.08 8.14 -51.93 -0.42 0.66 14 23 H 0.18 2.88 8.06 -52.49 -0.42 2.46 14 LS Contribution 217.28 15.07 3.27 3.27 Total: -1.00 -30.92 217.28 -4.64 -35.56 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -2.02 Total: -1.12 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.40 Total: -9.03 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.96 Total: -31.21 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.43 Total: -12.71 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -30.92 -4.64 -35.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311906.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.282 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds