Wall clock time and date at job start Mon Mar 30 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 C 1.52998 * 109.47209 * 239.99483 * 2 1 3 5 5 C 1.53005 * 109.47028 * 119.99746 * 2 1 3 6 6 C 1.53001 * 109.47121 * 59.99781 * 5 2 1 7 7 H 1.09002 * 115.55911 * 29.29701 * 6 5 2 8 8 C 1.53000 * 117.50223 * 243.61012 * 6 5 2 9 9 C 1.52997 * 117.49889 * 174.98273 * 6 5 2 10 10 H 1.08999 * 117.49685 * 0.02562 * 9 6 5 11 11 C 1.50696 * 117.52180 * 214.96954 * 9 6 5 12 12 H 1.08004 * 119.99870 * 359.97438 * 11 9 6 13 13 C 1.37872 * 120.00324 * 179.97438 * 11 9 6 14 14 N 1.31519 * 119.99602 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00299 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46778 * 90.00638 * 15 13 11 17 17 H 1.48500 * 109.47162 * 210.00430 * 15 13 11 18 18 H 1.48498 * 109.47100 * 330.00731 * 15 13 11 19 19 H 1.08996 * 109.47272 * 299.99813 * 1 2 3 20 20 H 1.08996 * 109.47202 * 60.00399 * 1 2 3 21 21 H 1.09002 * 109.47458 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46993 * 180.02562 * 3 2 1 23 23 H 1.09005 * 109.46972 * 299.99592 * 3 2 1 24 24 H 1.08991 * 109.47365 * 59.99769 * 3 2 1 25 25 H 1.09002 * 109.46999 * 300.00390 * 4 2 1 26 26 H 1.09005 * 109.47065 * 60.00206 * 4 2 1 27 27 H 1.08994 * 109.47194 * 179.97438 * 4 2 1 28 28 H 1.08996 * 109.46714 * 300.00403 * 5 2 1 29 29 H 1.08994 * 109.46846 * 180.02562 * 5 2 1 30 30 H 1.08990 * 117.49990 * 145.01974 * 8 6 5 31 31 H 1.09004 * 117.49237 * 359.97438 * 8 6 5 32 32 H 0.97005 * 119.99320 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.5299 -2.1637 1.2494 7 1 1.3618 -2.6031 0.2662 8 6 0.5862 -2.5793 2.3797 9 6 2.0286 -3.0893 2.3609 10 1 2.7198 -2.6704 3.0923 11 6 2.2496 -4.5388 2.0132 12 1 2.0561 -4.8891 1.0100 13 6 2.6988 -5.4179 2.9756 14 7 2.9340 -4.9915 4.1973 15 14 2.9734 -7.2147 2.5444 16 1 4.3697 -7.4032 2.0752 17 1 2.7377 -8.0539 3.7466 18 1 2.0314 -7.6151 1.4686 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 3.1300 1.4425 -0.0005 23 1 1.6766 1.9563 -0.8901 24 1 1.6766 1.9563 0.8899 25 1 1.6766 -1.7490 -1.2491 26 1 1.6767 -0.2076 -2.1392 27 1 3.1300 -0.7210 -1.2494 28 1 1.6766 -0.2074 2.1392 29 1 3.1299 -0.7208 1.2495 30 1 -0.2028 -3.2921 2.1400 31 1 0.3290 -1.8251 3.1234 32 1 3.2497 -5.6101 4.8745 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260326625.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:33 Heat of formation + Delta-G solvation = -25.712347 kcal Electronic energy + Delta-G solvation = -11119.204290 eV Core-core repulsion = 9271.703454 eV Total energy + Delta-G solvation = -1847.500837 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.46608 -36.78353 -34.19553 -28.75570 -28.08869 -28.02364 -27.02498 -22.40058 -21.35543 -19.51506 -18.48810 -16.65838 -15.84544 -15.39707 -15.35670 -14.69219 -14.11036 -13.91544 -13.15905 -13.07478 -12.97369 -12.81036 -12.53580 -12.49879 -12.29932 -12.15229 -11.71908 -11.50236 -11.34389 -11.13285 -10.99890 -10.29704 -10.03301 -8.20362 -6.25780 1.39520 1.40485 1.51827 2.39316 2.99987 3.58130 3.89329 4.03992 4.09691 4.47229 4.57866 4.67403 4.79525 4.82191 4.90594 4.91588 5.00768 5.08100 5.08507 5.09785 5.19882 5.24799 5.30917 5.47542 5.51741 5.60986 5.64646 5.71243 5.82249 6.36044 6.81221 7.36499 8.91297 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.068535 B = 0.009004 C = 0.008724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.452710 B = 3108.829485 C = 3208.646646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 C -0.136 4.136 4 C -0.140 4.140 5 C -0.069 4.069 6 C -0.147 4.147 7 H 0.089 0.911 8 C -0.201 4.201 9 C -0.011 4.011 10 H 0.043 0.957 11 C -0.513 4.513 12 H 0.055 0.945 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.965 3.035 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.265 1.265 19 H 0.050 0.950 20 H 0.066 0.934 21 H 0.044 0.956 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 8.965 -8.372 12.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.066 4.066 3 C -0.193 4.193 4 C -0.197 4.197 5 C -0.106 4.106 6 C -0.166 4.166 7 H 0.107 0.893 8 C -0.239 4.239 9 C -0.030 4.030 10 H 0.061 0.939 11 C -0.551 4.551 12 H 0.073 0.927 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.790 3.210 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.190 1.190 19 H 0.070 0.930 20 H 0.085 0.915 21 H 0.063 0.937 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.536 8.908 -8.196 12.367 hybrid contribution 0.154 -1.084 0.354 1.150 sum -2.382 7.824 -7.842 11.331 Atomic orbital electron populations 1.21801 0.94315 1.01400 1.01601 1.20527 0.96057 0.95664 0.94388 1.21829 1.00879 0.94400 1.02177 1.21898 1.00731 1.00035 0.97052 1.21165 0.99127 0.92525 0.97790 1.22365 1.04811 0.95879 0.93501 0.89344 1.23011 0.95913 1.03153 1.01827 1.19852 0.92717 0.93523 0.96880 0.93926 1.21037 1.44151 0.93586 0.96277 0.92665 1.25930 0.94627 1.03688 0.94759 1.70103 1.46222 1.36824 1.03362 0.85449 0.78859 0.78822 0.77911 1.19614 1.20550 1.18977 0.93049 0.91550 0.93727 0.92813 0.91289 0.92674 0.93644 0.91319 0.93099 0.92930 0.93193 0.91581 0.90933 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 8.23 71.98 0.59 -2.90 16 2 C -0.07 -1.83 0.80 -52.18 -0.04 -1.87 16 3 C -0.14 -3.03 8.47 71.98 0.61 -2.42 16 4 C -0.14 -3.74 8.23 71.98 0.59 -3.15 16 5 C -0.07 -2.42 4.55 30.60 0.14 -2.28 16 6 C -0.15 -6.31 3.96 -10.79 -0.04 -6.35 16 7 H 0.09 3.78 6.06 -2.39 -0.01 3.76 16 8 C -0.20 -9.40 9.88 30.60 0.30 -9.10 16 9 C -0.01 -0.60 5.30 -11.54 -0.06 -0.67 16 10 H 0.04 2.53 7.90 -2.39 -0.02 2.51 16 11 C -0.51 -29.83 9.20 25.60 0.24 -29.59 16 12 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 13 C 0.01 0.50 5.46 84.65 0.46 0.96 16 14 N -0.93 -56.51 13.13 21.45 0.28 -56.23 16 15 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 19 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 20 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.04 1.31 7.20 -2.39 -0.02 1.29 16 22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.04 1.36 6.14 -2.39 -0.01 1.35 16 26 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.84 7.87 -2.39 -0.02 1.82 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 31 H 0.07 3.18 8.03 -2.38 -0.02 3.16 16 32 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -62.13 260.67 6.15 -55.98 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.05 Total: 10.98 kcal Atomic # 6 Polarization: -60.16 SS G_CDS: 2.79 Total: -57.37 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.28 Total: -56.23 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -62.13 6.15 -55.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260326625.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.268 kcal (2) G-P(sol) polarization free energy of solvation -62.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds