Wall clock time and date at job start Mon Mar 30 2020 01:56:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52998 * 109.47173 * 2 1
4 4 C 1.53002 * 109.46845 * 240.00015 * 2 1 3
5 5 C 1.53002 * 109.47248 * 120.00146 * 2 1 3
6 6 C 1.53008 * 109.46918 * 59.99572 * 5 2 1
7 7 H 1.08999 * 115.55053 * 330.72647 * 6 5 2
8 8 C 1.53000 * 117.49506 * 116.39304 * 6 5 2
9 9 C 1.53002 * 60.02940 * 107.50086 * 8 6 5
10 10 H 1.08999 * 117.49664 * 252.51862 * 9 8 6
11 11 C 1.50695 * 117.50044 * 107.50594 * 9 8 6
12 12 H 1.08004 * 119.99678 * 291.38712 * 11 9 8
13 13 C 1.37876 * 120.00587 * 111.38973 * 11 9 8
14 14 N 1.31511 * 119.99646 * 359.97438 * 13 11 9
15 15 Si 1.86799 * 119.99991 * 180.02562 * 13 11 9
16 16 H 1.48501 * 109.47428 * 359.97438 * 15 13 11
17 17 H 1.48495 * 109.47451 * 119.99882 * 15 13 11
18 18 H 1.48509 * 109.46786 * 239.99475 * 15 13 11
19 19 H 1.08999 * 109.47215 * 300.00061 * 1 2 3
20 20 H 1.08996 * 109.47359 * 59.99678 * 1 2 3
21 21 H 1.08998 * 109.47428 * 180.02562 * 1 2 3
22 22 H 1.09000 * 109.46899 * 180.02562 * 3 2 1
23 23 H 1.08996 * 109.46879 * 299.99705 * 3 2 1
24 24 H 1.08993 * 109.47331 * 60.00233 * 3 2 1
25 25 H 1.09007 * 109.47165 * 300.00211 * 4 2 1
26 26 H 1.08997 * 109.47270 * 59.99638 * 4 2 1
27 27 H 1.09000 * 109.47271 * 180.02562 * 4 2 1
28 28 H 1.08999 * 109.46844 * 300.00021 * 5 2 1
29 29 H 1.09000 * 109.47096 * 179.97438 * 5 2 1
30 30 H 1.09002 * 117.49833 * 215.00191 * 8 6 5
31 31 H 1.09002 * 117.49953 * 0.02562 * 8 6 5
32 32 H 0.97002 * 119.99533 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 2.0400 -0.7213 1.2492
6 6 1.5299 -2.1638 1.2492
7 1 0.5762 -2.3252 0.7468
8 6 2.5714 -3.2814 1.1637
9 6 1.8351 -3.0217 2.4796
10 1 2.3992 -2.5582 3.2889
11 6 0.7942 -4.0253 2.9042
12 1 -0.1256 -4.1182 2.3460
13 6 1.0160 -4.8248 4.0054
14 7 2.1363 -4.7119 4.6849
15 14 -0.2741 -6.0692 4.5313
16 1 -1.4346 -5.9996 3.6073
17 1 0.3095 -7.4341 4.4917
18 1 -0.7230 -5.7627 5.9133
19 1 -0.3633 0.5138 0.8900
20 1 -0.3634 0.5139 -0.8899
21 1 -0.3634 -1.0276 0.0005
22 1 3.1300 1.4424 -0.0005
23 1 1.6767 1.9562 -0.8900
24 1 1.6768 1.9563 0.8899
25 1 1.6765 -1.7490 -1.2493
26 1 1.6766 -0.2075 -2.1392
27 1 3.1299 -0.7217 -1.2491
28 1 1.6767 -0.2075 2.1392
29 1 3.1300 -0.7217 1.2490
30 1 2.3028 -4.1780 0.6051
31 1 3.6200 -2.9889 1.1080
32 1 2.2925 -5.2746 5.4594
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260326635.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:56:35
Heat of formation + Delta-G solvation = -10.758425 kcal
Electronic energy + Delta-G solvation = -11118.270634 eV
Core-core repulsion = 9271.418248 eV
Total energy + Delta-G solvation = -1846.852386 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 182.137 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-37.96885 -35.11241 -32.07925 -27.18434 -26.89917 -26.89221 -25.04250 -20.45090
-19.60524 -18.13080 -16.41699 -14.71016 -14.32846 -14.15326 -13.83299 -13.09938
-12.60411 -12.37782 -11.90888 -11.56014 -11.35972 -11.12717 -10.99247 -10.89462
-10.81087 -10.42798 -10.26652 -10.19218 -9.76404 -9.30996 -8.94126 -8.32721
-8.08022 -6.04198 -4.02395 3.29172 3.37011 3.41467 4.41794 5.05401
5.16488 5.23087 5.24191 5.57978 5.83226 5.88356 5.91934 6.07742
6.09787 6.13533 6.20609 6.36655 6.39857 6.47063 6.52459 6.69403
6.78616 6.84744 6.93200 7.02087 7.06357 7.49137 7.71675 7.94567
8.50407 8.99224 9.56847 11.06655
Molecular weight = 182.14amu
Principal moments of inertia in cm(-1)
A = 0.068551 B = 0.009003 C = 0.008722
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 408.356594 B = 3109.499983 C = 3209.339523
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.068 4.068
3 C -0.140 4.140
4 C -0.135 4.135
5 C -0.070 4.070
6 C -0.186 4.186
7 H 0.087 0.913
8 C -0.209 4.209
9 C 0.032 3.968
10 H 0.073 0.927
11 C -0.492 4.492
12 H 0.057 0.943
13 C 0.064 3.936
14 N -0.888 5.888
15 Si 0.894 3.106
16 H -0.272 1.272
17 H -0.283 1.283
18 H -0.283 1.283
19 H 0.051 0.949
20 H 0.043 0.957
21 H 0.062 0.938
22 H 0.050 0.950
23 H 0.047 0.953
24 H 0.051 0.949
25 H 0.061 0.939
26 H 0.042 0.958
27 H 0.048 0.952
28 H 0.055 0.945
29 H 0.051 0.949
30 H 0.070 0.930
31 H 0.061 0.939
32 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.990 7.931 -7.681 11.085
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.068 4.068
3 C -0.197 4.197
4 C -0.192 4.192
5 C -0.107 4.107
6 C -0.204 4.204
7 H 0.105 0.895
8 C -0.247 4.247
9 C 0.014 3.986
10 H 0.091 0.909
11 C -0.529 4.529
12 H 0.076 0.924
13 C -0.138 4.138
14 N -0.526 5.526
15 Si 0.722 3.278
16 H -0.196 1.196
17 H -0.209 1.209
18 H -0.209 1.209
19 H 0.070 0.930
20 H 0.063 0.937
21 H 0.081 0.919
22 H 0.069 0.931
23 H 0.067 0.933
24 H 0.070 0.930
25 H 0.081 0.919
26 H 0.061 0.939
27 H 0.068 0.932
28 H 0.074 0.926
29 H 0.070 0.930
30 H 0.089 0.911
31 H 0.079 0.921
32 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -0.894 7.855 -7.515 10.908
hybrid contribution -0.526 -0.753 0.264 0.956
sum -1.420 7.102 -7.251 10.249
Atomic orbital electron populations
1.21900 0.95018 1.02217 1.00587 1.20534 0.95532 0.94516 0.96245
1.21873 1.00643 0.96163 1.01008 1.21815 1.00506 1.00836 0.96076
1.21144 0.99112 0.94781 0.95673 1.22384 0.98894 0.90083 1.09034
0.89486 1.23065 0.94382 0.98470 1.08772 1.19964 0.96692 0.95344
0.86593 0.90872 1.20746 1.02341 1.18306 1.11541 0.92435 1.25041
0.95472 0.97220 0.96096 1.69982 1.24314 1.39451 1.18804 0.86505
0.81680 0.81140 0.78507 1.19647 1.20918 1.20880 0.92969 0.93747
0.91878 0.93060 0.93340 0.92957 0.91946 0.93892 0.93238 0.92641
0.92978 0.91091 0.92079 0.92945
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.04 8.23 37.16 0.31 -1.73 16
2 C -0.07 -1.02 0.80 -154.51 -0.12 -1.14 16
3 C -0.14 -1.78 8.47 37.16 0.31 -1.47 16
4 C -0.14 -1.94 8.23 37.16 0.31 -1.63 16
5 C -0.07 -1.26 4.55 -26.73 -0.12 -1.38 16
6 C -0.19 -3.98 3.96 -90.58 -0.36 -4.34 16
7 H 0.09 1.88 6.05 -51.93 -0.31 1.56 16
8 C -0.21 -4.85 9.88 -26.73 -0.26 -5.12 16
9 C 0.03 0.85 5.30 -91.74 -0.49 0.37 16
10 H 0.07 2.07 7.90 -51.93 -0.41 1.66 16
11 C -0.49 -14.03 9.20 -34.44 -0.32 -14.35 16
12 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16
13 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16
14 N -0.89 -26.47 13.13 55.43 0.73 -25.75 16
15 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16
16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
17 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16
18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
19 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16
20 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
21 H 0.06 1.00 6.14 -51.93 -0.32 0.68 16
22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
25 H 0.06 0.98 7.20 -51.93 -0.37 0.60 16
26 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16
27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
29 H 0.05 0.94 7.87 -51.93 -0.41 0.53 16
30 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16
31 H 0.06 1.34 8.03 -51.93 -0.42 0.93 16
32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
LS Contribution 260.68 15.07 3.93 3.93
Total: -1.00 -28.87 260.68 -6.80 -35.67
By element:
Atomic # 1 Polarization: 4.25 SS G_CDS: -5.59 Total: -1.35 kcal
Atomic # 6 Polarization: -28.22 SS G_CDS: -0.84 Total: -29.06 kcal
Atomic # 7 Polarization: -26.47 SS G_CDS: 0.73 Total: -25.75 kcal
Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal
Total LS contribution 3.93 Total: 3.93 kcal
Total: -28.87 -6.80 -35.67 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260326635.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.911 kcal
(2) G-P(sol) polarization free energy of solvation -28.869 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.958 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.669 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.758 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds