Wall clock time and date at job start Mon Mar 30 2020 01:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47173 * 2 1 4 4 C 1.53002 * 109.46845 * 240.00015 * 2 1 3 5 5 C 1.53002 * 109.47248 * 120.00146 * 2 1 3 6 6 C 1.53008 * 109.46918 * 59.99572 * 5 2 1 7 7 H 1.08999 * 115.55053 * 330.72647 * 6 5 2 8 8 C 1.53000 * 117.49506 * 116.39304 * 6 5 2 9 9 C 1.53002 * 60.02940 * 107.50086 * 8 6 5 10 10 H 1.08999 * 117.49664 * 252.51862 * 9 8 6 11 11 C 1.50695 * 117.50044 * 107.50594 * 9 8 6 12 12 H 1.08004 * 119.99678 * 291.38712 * 11 9 8 13 13 C 1.37876 * 120.00587 * 111.38973 * 11 9 8 14 14 N 1.31511 * 119.99646 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99991 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47428 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47451 * 119.99882 * 15 13 11 18 18 H 1.48509 * 109.46786 * 239.99475 * 15 13 11 19 19 H 1.08999 * 109.47215 * 300.00061 * 1 2 3 20 20 H 1.08996 * 109.47359 * 59.99678 * 1 2 3 21 21 H 1.08998 * 109.47428 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46899 * 180.02562 * 3 2 1 23 23 H 1.08996 * 109.46879 * 299.99705 * 3 2 1 24 24 H 1.08993 * 109.47331 * 60.00233 * 3 2 1 25 25 H 1.09007 * 109.47165 * 300.00211 * 4 2 1 26 26 H 1.08997 * 109.47270 * 59.99638 * 4 2 1 27 27 H 1.09000 * 109.47271 * 180.02562 * 4 2 1 28 28 H 1.08999 * 109.46844 * 300.00021 * 5 2 1 29 29 H 1.09000 * 109.47096 * 179.97438 * 5 2 1 30 30 H 1.09002 * 117.49833 * 215.00191 * 8 6 5 31 31 H 1.09002 * 117.49953 * 0.02562 * 8 6 5 32 32 H 0.97002 * 119.99533 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -2.1638 1.2492 7 1 0.5762 -2.3252 0.7468 8 6 2.5714 -3.2814 1.1637 9 6 1.8351 -3.0217 2.4796 10 1 2.3992 -2.5582 3.2889 11 6 0.7942 -4.0253 2.9042 12 1 -0.1256 -4.1182 2.3460 13 6 1.0160 -4.8248 4.0054 14 7 2.1363 -4.7119 4.6849 15 14 -0.2741 -6.0692 4.5313 16 1 -1.4346 -5.9996 3.6073 17 1 0.3095 -7.4341 4.4917 18 1 -0.7230 -5.7627 5.9133 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 3.1300 1.4424 -0.0005 23 1 1.6767 1.9562 -0.8900 24 1 1.6768 1.9563 0.8899 25 1 1.6765 -1.7490 -1.2493 26 1 1.6766 -0.2075 -2.1392 27 1 3.1299 -0.7217 -1.2491 28 1 1.6767 -0.2075 2.1392 29 1 3.1300 -0.7217 1.2490 30 1 2.3028 -4.1780 0.6051 31 1 3.6200 -2.9889 1.1080 32 1 2.2925 -5.2746 5.4594 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260326635.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:35 Heat of formation + Delta-G solvation = -10.758425 kcal Electronic energy + Delta-G solvation = -11118.270634 eV Core-core repulsion = 9271.418248 eV Total energy + Delta-G solvation = -1846.852386 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.96885 -35.11241 -32.07925 -27.18434 -26.89917 -26.89221 -25.04250 -20.45090 -19.60524 -18.13080 -16.41699 -14.71016 -14.32846 -14.15326 -13.83299 -13.09938 -12.60411 -12.37782 -11.90888 -11.56014 -11.35972 -11.12717 -10.99247 -10.89462 -10.81087 -10.42798 -10.26652 -10.19218 -9.76404 -9.30996 -8.94126 -8.32721 -8.08022 -6.04198 -4.02395 3.29172 3.37011 3.41467 4.41794 5.05401 5.16488 5.23087 5.24191 5.57978 5.83226 5.88356 5.91934 6.07742 6.09787 6.13533 6.20609 6.36655 6.39857 6.47063 6.52459 6.69403 6.78616 6.84744 6.93200 7.02087 7.06357 7.49137 7.71675 7.94567 8.50407 8.99224 9.56847 11.06655 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.068551 B = 0.009003 C = 0.008722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.356594 B = 3109.499983 C = 3209.339523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.135 4.135 5 C -0.070 4.070 6 C -0.186 4.186 7 H 0.087 0.913 8 C -0.209 4.209 9 C 0.032 3.968 10 H 0.073 0.927 11 C -0.492 4.492 12 H 0.057 0.943 13 C 0.064 3.936 14 N -0.888 5.888 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 H 0.051 0.949 20 H 0.043 0.957 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 7.931 -7.681 11.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.197 4.197 4 C -0.192 4.192 5 C -0.107 4.107 6 C -0.204 4.204 7 H 0.105 0.895 8 C -0.247 4.247 9 C 0.014 3.986 10 H 0.091 0.909 11 C -0.529 4.529 12 H 0.076 0.924 13 C -0.138 4.138 14 N -0.526 5.526 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 H 0.070 0.930 20 H 0.063 0.937 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.894 7.855 -7.515 10.908 hybrid contribution -0.526 -0.753 0.264 0.956 sum -1.420 7.102 -7.251 10.249 Atomic orbital electron populations 1.21900 0.95018 1.02217 1.00587 1.20534 0.95532 0.94516 0.96245 1.21873 1.00643 0.96163 1.01008 1.21815 1.00506 1.00836 0.96076 1.21144 0.99112 0.94781 0.95673 1.22384 0.98894 0.90083 1.09034 0.89486 1.23065 0.94382 0.98470 1.08772 1.19964 0.96692 0.95344 0.86593 0.90872 1.20746 1.02341 1.18306 1.11541 0.92435 1.25041 0.95472 0.97220 0.96096 1.69982 1.24314 1.39451 1.18804 0.86505 0.81680 0.81140 0.78507 1.19647 1.20918 1.20880 0.92969 0.93747 0.91878 0.93060 0.93340 0.92957 0.91946 0.93892 0.93238 0.92641 0.92978 0.91091 0.92079 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.23 37.16 0.31 -1.73 16 2 C -0.07 -1.02 0.80 -154.51 -0.12 -1.14 16 3 C -0.14 -1.78 8.47 37.16 0.31 -1.47 16 4 C -0.14 -1.94 8.23 37.16 0.31 -1.63 16 5 C -0.07 -1.26 4.55 -26.73 -0.12 -1.38 16 6 C -0.19 -3.98 3.96 -90.58 -0.36 -4.34 16 7 H 0.09 1.88 6.05 -51.93 -0.31 1.56 16 8 C -0.21 -4.85 9.88 -26.73 -0.26 -5.12 16 9 C 0.03 0.85 5.30 -91.74 -0.49 0.37 16 10 H 0.07 2.07 7.90 -51.93 -0.41 1.66 16 11 C -0.49 -14.03 9.20 -34.44 -0.32 -14.35 16 12 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 13 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -26.47 13.13 55.43 0.73 -25.75 16 15 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 20 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.06 1.00 6.14 -51.93 -0.32 0.68 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.98 7.20 -51.93 -0.37 0.60 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.94 7.87 -51.93 -0.41 0.53 16 30 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.06 1.34 8.03 -51.93 -0.42 0.93 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 260.68 15.07 3.93 3.93 Total: -1.00 -28.87 260.68 -6.80 -35.67 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.59 Total: -1.35 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: -0.84 Total: -29.06 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.73 Total: -25.75 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.87 -6.80 -35.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260326635.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.911 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds