Wall clock time and date at job start Mon Mar 30 2020 01:56:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52998 * 109.47173 * 2 1
4 4 C 1.53002 * 109.46845 * 240.00015 * 2 1 3
5 5 C 1.53002 * 109.47248 * 120.00146 * 2 1 3
6 6 C 1.53008 * 109.46918 * 59.99572 * 5 2 1
7 7 H 1.08999 * 115.55053 * 330.72647 * 6 5 2
8 8 C 1.53000 * 117.49506 * 116.39304 * 6 5 2
9 9 C 1.53002 * 60.02940 * 107.50086 * 8 6 5
10 10 H 1.08999 * 117.49664 * 252.51862 * 9 8 6
11 11 C 1.50695 * 117.50044 * 107.50594 * 9 8 6
12 12 H 1.08004 * 119.99678 * 291.38712 * 11 9 8
13 13 C 1.37876 * 120.00587 * 111.38973 * 11 9 8
14 14 N 1.31511 * 119.99646 * 359.97438 * 13 11 9
15 15 Si 1.86799 * 119.99991 * 180.02562 * 13 11 9
16 16 H 1.48501 * 109.47428 * 359.97438 * 15 13 11
17 17 H 1.48495 * 109.47451 * 119.99882 * 15 13 11
18 18 H 1.48509 * 109.46786 * 239.99475 * 15 13 11
19 19 H 1.08999 * 109.47215 * 300.00061 * 1 2 3
20 20 H 1.08996 * 109.47359 * 59.99678 * 1 2 3
21 21 H 1.08998 * 109.47428 * 180.02562 * 1 2 3
22 22 H 1.09000 * 109.46899 * 180.02562 * 3 2 1
23 23 H 1.08996 * 109.46879 * 299.99705 * 3 2 1
24 24 H 1.08993 * 109.47331 * 60.00233 * 3 2 1
25 25 H 1.09007 * 109.47165 * 300.00211 * 4 2 1
26 26 H 1.08997 * 109.47270 * 59.99638 * 4 2 1
27 27 H 1.09000 * 109.47271 * 180.02562 * 4 2 1
28 28 H 1.08999 * 109.46844 * 300.00021 * 5 2 1
29 29 H 1.09000 * 109.47096 * 179.97438 * 5 2 1
30 30 H 1.09002 * 117.49833 * 215.00191 * 8 6 5
31 31 H 1.09002 * 117.49953 * 0.02562 * 8 6 5
32 32 H 0.97002 * 119.99533 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 2.0400 -0.7213 1.2492
6 6 1.5299 -2.1638 1.2492
7 1 0.5762 -2.3252 0.7468
8 6 2.5714 -3.2814 1.1637
9 6 1.8351 -3.0217 2.4796
10 1 2.3992 -2.5582 3.2889
11 6 0.7942 -4.0253 2.9042
12 1 -0.1256 -4.1182 2.3460
13 6 1.0160 -4.8248 4.0054
14 7 2.1363 -4.7119 4.6849
15 14 -0.2741 -6.0692 4.5313
16 1 -1.4346 -5.9996 3.6073
17 1 0.3095 -7.4341 4.4917
18 1 -0.7230 -5.7627 5.9133
19 1 -0.3633 0.5138 0.8900
20 1 -0.3634 0.5139 -0.8899
21 1 -0.3634 -1.0276 0.0005
22 1 3.1300 1.4424 -0.0005
23 1 1.6767 1.9562 -0.8900
24 1 1.6768 1.9563 0.8899
25 1 1.6765 -1.7490 -1.2493
26 1 1.6766 -0.2075 -2.1392
27 1 3.1299 -0.7217 -1.2491
28 1 1.6767 -0.2075 2.1392
29 1 3.1300 -0.7217 1.2490
30 1 2.3028 -4.1780 0.6051
31 1 3.6200 -2.9889 1.1080
32 1 2.2925 -5.2746 5.4594
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260326635.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:56:35
Heat of formation + Delta-G solvation = -25.751426 kcal
Electronic energy + Delta-G solvation = -11118.920779 eV
Core-core repulsion = 9271.418248 eV
Total energy + Delta-G solvation = -1847.502531 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 182.137 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-39.46342 -36.78154 -34.19702 -28.75714 -28.08911 -28.02326 -27.02640 -22.39927
-21.35735 -19.51453 -18.49059 -16.65844 -15.84620 -15.39583 -15.35667 -14.69542
-14.11019 -13.91840 -13.16312 -13.07557 -12.98161 -12.80460 -12.53493 -12.49670
-12.30184 -12.14797 -11.71417 -11.50281 -11.33383 -11.13099 -11.00973 -10.29885
-10.03039 -8.20572 -6.25887 1.39186 1.39617 1.53028 2.39240 2.99861
3.58072 3.89313 4.03979 4.09685 4.47212 4.57722 4.67368 4.79532
4.82167 4.90590 4.91565 5.00719 5.08126 5.08465 5.09762 5.19836
5.24835 5.30907 5.47585 5.51910 5.60980 5.64640 5.71267 5.82237
6.36015 6.81335 7.36446 8.91312
Molecular weight = 182.14amu
Principal moments of inertia in cm(-1)
A = 0.068551 B = 0.009003 C = 0.008722
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 408.356594 B = 3109.499983 C = 3209.339523
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.066 4.066
3 C -0.136 4.136
4 C -0.134 4.134
5 C -0.069 4.069
6 C -0.148 4.148
7 H 0.088 0.912
8 C -0.201 4.201
9 C -0.011 4.011
10 H 0.043 0.957
11 C -0.512 4.512
12 H 0.055 0.945
13 C 0.008 3.992
14 N -0.926 5.926
15 Si 0.966 3.034
16 H -0.264 1.264
17 H -0.277 1.277
18 H -0.276 1.276
19 H 0.050 0.950
20 H 0.068 0.932
21 H 0.044 0.956
22 H 0.054 0.946
23 H 0.068 0.932
24 H 0.053 0.947
25 H 0.044 0.956
26 H 0.066 0.934
27 H 0.050 0.950
28 H 0.049 0.951
29 H 0.052 0.948
30 H 0.066 0.934
31 H 0.072 0.928
32 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.735 8.669 -8.902 12.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.066 4.066
3 C -0.193 4.193
4 C -0.191 4.191
5 C -0.106 4.106
6 C -0.166 4.166
7 H 0.106 0.894
8 C -0.239 4.239
9 C -0.030 4.030
10 H 0.061 0.939
11 C -0.550 4.550
12 H 0.073 0.927
13 C -0.190 4.190
14 N -0.565 5.565
15 Si 0.790 3.210
16 H -0.188 1.188
17 H -0.203 1.203
18 H -0.201 1.201
19 H 0.069 0.931
20 H 0.087 0.913
21 H 0.063 0.937
22 H 0.073 0.927
23 H 0.087 0.913
24 H 0.072 0.928
25 H 0.063 0.937
26 H 0.084 0.916
27 H 0.070 0.930
28 H 0.068 0.932
29 H 0.071 0.929
30 H 0.084 0.916
31 H 0.091 0.909
32 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -1.643 8.603 -8.749 12.380
hybrid contribution -0.263 -0.941 0.618 1.156
sum -1.906 7.661 -8.132 11.334
Atomic orbital electron populations
1.21897 0.94653 1.01393 1.01775 1.20528 0.95828 0.95706 0.94579
1.21827 1.00920 0.94399 1.02135 1.21803 1.00657 0.99960 0.96697
1.21167 0.99163 0.92721 0.97553 1.22379 0.98357 0.91515 1.04327
0.89351 1.23012 0.95472 0.99301 1.06095 1.19868 0.97973 0.97701
0.87459 0.93920 1.21066 1.02728 1.19082 1.12082 0.92673 1.25929
0.97694 0.99242 0.96161 1.70105 1.26313 1.40673 1.19429 0.85396
0.78970 0.78386 0.78263 1.18796 1.20282 1.20129 0.93102 0.91312
0.93655 0.92676 0.91290 0.92808 0.93728 0.91551 0.93043 0.93189
0.92923 0.91569 0.90936 0.92730
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.75 8.23 71.98 0.59 -3.15 16
2 C -0.07 -1.83 0.80 -52.18 -0.04 -1.87 16
3 C -0.14 -3.03 8.47 71.98 0.61 -2.42 16
4 C -0.13 -3.50 8.23 71.98 0.59 -2.90 16
5 C -0.07 -2.42 4.55 30.60 0.14 -2.28 16
6 C -0.15 -6.32 3.96 -10.77 -0.04 -6.36 16
7 H 0.09 3.78 6.05 -2.39 -0.01 3.76 16
8 C -0.20 -9.39 9.88 30.60 0.30 -9.08 16
9 C -0.01 -0.62 5.30 -11.52 -0.06 -0.68 16
10 H 0.04 2.53 7.90 -2.39 -0.02 2.51 16
11 C -0.51 -29.77 9.20 25.60 0.24 -29.54 16
12 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16
13 C 0.01 0.48 5.46 84.66 0.46 0.95 16
14 N -0.93 -56.49 13.13 21.45 0.28 -56.20 16
15 Si 0.97 44.64 29.54 68.60 2.03 46.66 16
16 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16
17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16
19 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16
20 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16
21 H 0.04 1.36 6.14 -2.39 -0.01 1.34 16
22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16
23 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16
25 H 0.04 1.31 7.20 -2.38 -0.02 1.29 16
26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16
28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
29 H 0.05 1.84 7.87 -2.39 -0.02 1.82 16
30 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16
31 H 0.07 3.18 8.03 -2.39 -0.02 3.16 16
32 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16
Total: -1.00 -62.16 260.68 6.15 -56.01
By element:
Atomic # 1 Polarization: 9.82 SS G_CDS: 1.05 Total: 10.87 kcal
Atomic # 6 Polarization: -60.13 SS G_CDS: 2.79 Total: -57.34 kcal
Atomic # 7 Polarization: -56.49 SS G_CDS: 0.28 Total: -56.20 kcal
Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal
Total: -62.16 6.15 -56.01 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260326635.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.260 kcal
(2) G-P(sol) polarization free energy of solvation -62.158 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.898 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.011 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.751 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds