Wall clock time and date at job start Mon Mar 30 2020 02:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46807 * 2 1 4 4 C 1.53003 * 109.47193 * 119.99859 * 2 1 3 5 5 C 1.52997 * 109.46911 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47630 * 300.00256 * 5 4 2 7 7 C 1.53003 * 109.47182 * 59.99910 * 6 5 4 8 8 H 1.08998 * 109.47678 * 180.02562 * 7 6 5 9 9 C 1.53010 * 109.46928 * 60.00045 * 7 6 5 10 10 C 1.52993 * 109.46891 * 240.00256 * 2 1 3 11 11 C 1.50695 * 109.47573 * 59.99713 * 10 2 1 12 12 H 1.08005 * 119.99615 * 35.13114 * 11 10 2 13 13 C 1.37875 * 120.00677 * 214.85268 * 11 10 2 14 14 N 1.31516 * 119.99538 * 353.09313 * 13 11 10 15 15 Si 1.86795 * 120.00346 * 173.09052 * 13 11 10 16 16 H 1.48502 * 109.47129 * 60.00491 * 15 13 11 17 17 H 1.48498 * 109.47219 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47220 * 300.00137 * 15 13 11 19 19 H 1.09002 * 109.46794 * 178.82938 * 1 2 3 20 20 H 1.09006 * 109.46855 * 298.82166 * 1 2 3 21 21 H 1.09000 * 109.47178 * 58.82376 * 1 2 3 22 22 H 1.08997 * 109.46667 * 60.00080 * 4 2 1 23 23 H 1.08998 * 109.47194 * 300.00267 * 4 2 1 24 24 H 1.09006 * 109.47054 * 180.02562 * 5 4 2 25 25 H 1.08997 * 109.47090 * 60.00706 * 5 4 2 26 26 H 1.08997 * 109.47252 * 300.00352 * 6 5 4 27 27 H 1.09000 * 109.47782 * 179.97438 * 6 5 4 28 28 H 1.08998 * 109.47062 * 299.99932 * 9 7 6 29 29 H 1.08994 * 109.46854 * 60.00433 * 9 7 6 30 30 H 1.08992 * 109.46886 * 180.02562 * 9 7 6 31 31 H 1.08999 * 109.47186 * 299.99512 * 10 2 1 32 32 H 0.97003 * 120.00208 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2489 6 6 4.0796 -1.4433 -0.0003 7 6 3.5696 -0.7220 -1.2496 8 1 3.9322 -1.2363 -2.1396 9 6 4.0800 0.7204 -1.2498 10 6 2.0400 -0.7212 -1.2492 11 6 1.5376 -0.0108 -2.4797 12 1 1.4365 1.0645 -2.4789 13 6 1.2126 -0.7330 -3.6083 14 7 1.4675 -2.0221 -3.6601 15 14 0.4100 0.1196 -5.0637 16 1 1.3088 1.1886 -5.5685 17 1 0.1629 -0.8703 -6.1427 18 1 -0.8802 0.7182 -4.6369 19 1 -0.3633 -1.0275 -0.0210 20 1 -0.3633 0.4955 0.9004 21 1 -0.3633 0.5320 -0.8792 22 1 1.6767 -1.7489 1.2492 23 1 1.6767 -0.2074 2.1392 24 1 3.9334 -1.2360 2.1387 25 1 3.9337 0.3058 1.2487 26 1 3.7159 -2.4708 -0.0001 27 1 5.1696 -1.4433 -0.0008 28 1 3.7170 1.2344 -0.3599 29 1 5.1700 0.7200 -1.2501 30 1 3.7163 1.2343 -2.1395 31 1 1.6767 -1.7488 -1.2492 32 1 1.2385 -2.5304 -4.4540 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260373801.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:01 Heat of formation + Delta-G solvation = -40.555421 kcal Electronic energy + Delta-G solvation = -11840.505939 eV Core-core repulsion = 9992.361458 eV Total energy + Delta-G solvation = -1848.144481 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.33711 -32.78632 -32.05631 -30.27226 -26.18564 -25.56986 -23.92331 -21.00171 -19.89501 -17.54204 -16.19958 -14.66153 -14.12923 -13.73516 -13.43692 -12.71460 -12.58719 -12.06954 -11.72724 -11.39836 -10.96187 -10.88113 -10.79062 -10.66836 -10.43036 -10.13489 -9.91960 -9.82072 -9.47704 -9.10845 -8.56289 -8.49550 -8.20628 -5.92797 -3.92393 3.35537 3.40703 3.43252 4.50339 5.37121 5.57391 5.67660 5.75161 6.14531 6.24297 6.34641 6.37528 6.42283 6.44966 6.52517 6.65657 6.71017 6.78407 6.78823 6.92814 7.02992 7.24427 7.24502 7.34053 7.42980 7.61980 7.87255 7.98222 8.09880 8.58199 9.15233 9.69120 11.16822 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.047941 B = 0.015231 C = 0.013632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.917034 B = 1837.904395 C = 2053.557476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 H 0.053 0.947 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.079 4.079 8 H 0.061 0.939 9 C -0.133 4.133 10 C 0.052 3.948 11 C -0.499 4.499 12 H 0.051 0.949 13 C 0.062 3.938 14 N -0.893 5.893 15 Si 0.882 3.118 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.278 1.278 19 H 0.042 0.958 20 H 0.024 0.976 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.023 0.977 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 2.413 6.313 7.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.104 4.104 3 H 0.071 0.929 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.153 4.153 7 C -0.098 4.098 8 H 0.080 0.920 9 C -0.190 4.190 10 C 0.033 3.967 11 C -0.537 4.537 12 H 0.069 0.931 13 C -0.138 4.138 14 N -0.532 5.532 15 Si 0.711 3.289 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.204 1.204 19 H 0.061 0.939 20 H 0.043 0.957 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.977 2.248 6.185 6.872 hybrid contribution -0.413 0.368 -0.904 1.060 sum 1.565 2.615 5.282 6.098 Atomic orbital electron populations 1.21652 0.96611 1.00700 0.99599 1.21255 0.94671 0.98983 0.95480 0.92887 1.21620 0.95058 1.00370 0.97984 1.21505 0.96318 1.00193 0.97152 1.21631 0.98249 0.99306 0.96067 1.21180 0.99598 0.93956 0.95047 0.92026 1.21792 0.97405 0.98442 1.01377 1.18806 0.89763 0.97302 0.90789 1.21030 1.42556 0.93089 0.97054 0.93075 1.24950 0.95791 0.94825 0.98283 1.69951 1.47657 1.06721 1.28883 0.86820 0.80195 0.79314 0.82619 1.20429 1.21518 1.20374 0.93904 0.95675 0.91961 0.92881 0.94008 0.93931 0.92487 0.92939 0.94136 0.93809 0.95763 0.92284 0.93159 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.92 37.16 0.33 -2.27 16 2 C -0.09 -1.78 1.96 -90.62 -0.18 -1.96 16 3 H 0.05 1.11 6.43 -51.93 -0.33 0.78 16 4 C -0.11 -2.06 5.20 -26.73 -0.14 -2.20 16 5 C -0.11 -1.97 5.65 -26.74 -0.15 -2.12 16 6 C -0.11 -2.20 5.45 -26.73 -0.15 -2.35 16 7 C -0.08 -1.76 2.71 -90.63 -0.25 -2.01 16 8 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 9 C -0.13 -2.70 8.25 37.16 0.31 -2.40 16 10 C 0.05 1.26 1.48 -91.80 -0.14 1.13 16 11 C -0.50 -13.32 5.83 -34.44 -0.20 -13.52 16 12 H 0.05 1.36 7.75 -52.48 -0.41 0.96 16 13 C 0.06 1.73 5.45 -17.82 -0.10 1.63 16 14 N -0.89 -25.93 12.87 55.43 0.71 -25.22 16 15 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 20 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.06 1.35 7.26 -51.93 -0.38 0.97 16 22 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.96 6.43 -51.93 -0.33 0.62 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.83 4.81 -51.93 -0.25 0.58 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 1.29 7.16 -51.93 -0.37 0.91 16 31 H 0.05 1.39 7.42 -51.93 -0.39 1.00 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 243.50 15.07 3.67 3.67 Total: -1.00 -27.47 243.50 -6.69 -34.16 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -5.40 Total: -2.91 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: -0.66 Total: -26.06 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.71 Total: -25.22 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.47 -6.69 -34.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260373801.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.394 kcal (2) G-P(sol) polarization free energy of solvation -27.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds