Wall clock time and date at job start Mon Mar 30 2020 02:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46807 * 2 1 4 4 C 1.53003 * 109.47193 * 119.99859 * 2 1 3 5 5 C 1.52997 * 109.46911 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47630 * 300.00256 * 5 4 2 7 7 C 1.53003 * 109.47182 * 59.99910 * 6 5 4 8 8 H 1.08998 * 109.47678 * 180.02562 * 7 6 5 9 9 C 1.53010 * 109.46928 * 60.00045 * 7 6 5 10 10 C 1.52993 * 109.46891 * 240.00256 * 2 1 3 11 11 C 1.50695 * 109.47573 * 59.99713 * 10 2 1 12 12 H 1.08005 * 119.99615 * 35.13114 * 11 10 2 13 13 C 1.37875 * 120.00677 * 214.85268 * 11 10 2 14 14 N 1.31516 * 119.99538 * 353.09313 * 13 11 10 15 15 Si 1.86795 * 120.00346 * 173.09052 * 13 11 10 16 16 H 1.48502 * 109.47129 * 60.00491 * 15 13 11 17 17 H 1.48498 * 109.47219 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47220 * 300.00137 * 15 13 11 19 19 H 1.09002 * 109.46794 * 178.82938 * 1 2 3 20 20 H 1.09006 * 109.46855 * 298.82166 * 1 2 3 21 21 H 1.09000 * 109.47178 * 58.82376 * 1 2 3 22 22 H 1.08997 * 109.46667 * 60.00080 * 4 2 1 23 23 H 1.08998 * 109.47194 * 300.00267 * 4 2 1 24 24 H 1.09006 * 109.47054 * 180.02562 * 5 4 2 25 25 H 1.08997 * 109.47090 * 60.00706 * 5 4 2 26 26 H 1.08997 * 109.47252 * 300.00352 * 6 5 4 27 27 H 1.09000 * 109.47782 * 179.97438 * 6 5 4 28 28 H 1.08998 * 109.47062 * 299.99932 * 9 7 6 29 29 H 1.08994 * 109.46854 * 60.00433 * 9 7 6 30 30 H 1.08992 * 109.46886 * 180.02562 * 9 7 6 31 31 H 1.08999 * 109.47186 * 299.99512 * 10 2 1 32 32 H 0.97003 * 120.00208 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2489 6 6 4.0796 -1.4433 -0.0003 7 6 3.5696 -0.7220 -1.2496 8 1 3.9322 -1.2363 -2.1396 9 6 4.0800 0.7204 -1.2498 10 6 2.0400 -0.7212 -1.2492 11 6 1.5376 -0.0108 -2.4797 12 1 1.4365 1.0645 -2.4789 13 6 1.2126 -0.7330 -3.6083 14 7 1.4675 -2.0221 -3.6601 15 14 0.4100 0.1196 -5.0637 16 1 1.3088 1.1886 -5.5685 17 1 0.1629 -0.8703 -6.1427 18 1 -0.8802 0.7182 -4.6369 19 1 -0.3633 -1.0275 -0.0210 20 1 -0.3633 0.4955 0.9004 21 1 -0.3633 0.5320 -0.8792 22 1 1.6767 -1.7489 1.2492 23 1 1.6767 -0.2074 2.1392 24 1 3.9334 -1.2360 2.1387 25 1 3.9337 0.3058 1.2487 26 1 3.7159 -2.4708 -0.0001 27 1 5.1696 -1.4433 -0.0008 28 1 3.7170 1.2344 -0.3599 29 1 5.1700 0.7200 -1.2501 30 1 3.7163 1.2343 -2.1395 31 1 1.6767 -1.7488 -1.2492 32 1 1.2385 -2.5304 -4.4540 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260373801.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:01 Heat of formation + Delta-G solvation = -54.940893 kcal Electronic energy + Delta-G solvation = -11841.129740 eV Core-core repulsion = 9992.361458 eV Total energy + Delta-G solvation = -1848.768282 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.01474 -34.76913 -33.71554 -32.00344 -28.06922 -27.15310 -25.81089 -22.64319 -21.56446 -19.25509 -18.25806 -16.61897 -15.79094 -15.39306 -15.04320 -14.49602 -14.23652 -13.89360 -13.37543 -13.05092 -12.81047 -12.66235 -12.53498 -12.33612 -12.23123 -11.76228 -11.69021 -11.44920 -11.18772 -10.94071 -10.49930 -10.27528 -10.16291 -8.05054 -6.09284 1.40653 1.41704 1.48568 2.46565 3.25491 4.06525 4.19161 4.23161 4.53011 4.62579 4.76889 4.77850 4.87743 4.90564 5.00003 5.08217 5.14180 5.21279 5.26027 5.36117 5.44424 5.50286 5.58986 5.64858 5.73641 5.77709 5.84533 6.10012 6.17491 6.52853 7.06606 7.54490 9.04249 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.047941 B = 0.015231 C = 0.013632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.917034 B = 1837.904395 C = 2053.557476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.084 4.084 3 H 0.058 0.942 4 C -0.110 4.110 5 C -0.109 4.109 6 C -0.111 4.111 7 C -0.080 4.080 8 H 0.018 0.982 9 C -0.124 4.124 10 C 0.050 3.950 11 C -0.500 4.500 12 H 0.049 0.951 13 C 0.008 3.992 14 N -0.930 5.930 15 Si 0.940 3.060 16 H -0.272 1.272 17 H -0.290 1.290 18 H -0.271 1.271 19 H 0.029 0.971 20 H 0.059 0.941 21 H 0.040 0.960 22 H 0.042 0.958 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.006 0.994 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.421 3.797 7.950 9.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.102 4.102 3 H 0.076 0.924 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.149 4.149 7 C -0.100 4.100 8 H 0.037 0.963 9 C -0.181 4.181 10 C 0.032 3.968 11 C -0.538 4.538 12 H 0.067 0.933 13 C -0.189 4.189 14 N -0.571 5.571 15 Si 0.767 3.233 16 H -0.198 1.198 17 H -0.216 1.216 18 H -0.196 1.196 19 H 0.048 0.952 20 H 0.078 0.922 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.025 0.975 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.398 3.650 7.829 8.965 hybrid contribution -0.537 -0.068 -1.398 1.499 sum 1.860 3.582 6.431 7.593 Atomic orbital electron populations 1.21608 0.96384 0.99976 1.00295 1.21186 0.94982 0.98940 0.95131 0.92385 1.21589 0.95995 0.99714 0.97453 1.21492 0.95318 1.00912 0.96884 1.21568 0.99457 0.98321 0.95556 1.21061 0.98214 0.95526 0.95151 0.96303 1.21686 0.98829 0.96496 1.01094 1.18749 0.91222 0.94944 0.91928 1.21364 1.41433 0.93019 0.97982 0.93289 1.25674 0.96804 0.95411 1.01030 1.70092 1.49377 1.08126 1.29497 0.85885 0.79519 0.78317 0.79612 1.19762 1.21622 1.19637 0.95206 0.92220 0.94092 0.93903 0.91003 0.90951 0.91240 0.94430 0.92097 0.92012 0.93457 0.94536 0.97541 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 8.92 71.98 0.64 -4.30 16 2 C -0.08 -3.38 1.96 -10.79 -0.02 -3.40 16 3 H 0.06 2.29 6.43 -2.39 -0.02 2.27 16 4 C -0.11 -3.69 5.20 30.59 0.16 -3.53 16 5 C -0.11 -3.34 5.65 30.59 0.17 -3.17 16 6 C -0.11 -4.09 5.45 30.59 0.17 -3.93 16 7 C -0.08 -3.60 2.71 -10.80 -0.03 -3.63 16 8 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 9 C -0.12 -4.83 8.25 71.99 0.59 -4.24 16 10 C 0.05 2.48 1.48 -11.56 -0.02 2.46 16 11 C -0.50 -27.15 5.83 25.60 0.15 -27.00 16 12 H 0.05 2.63 7.75 -2.91 -0.02 2.61 16 13 C 0.01 0.45 5.45 84.65 0.46 0.91 16 14 N -0.93 -56.06 12.87 21.45 0.28 -55.79 16 15 Si 0.94 44.60 29.54 68.60 2.03 46.63 16 16 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 17 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 19 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 20 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 21 H 0.04 1.75 7.26 -2.39 -0.02 1.73 16 22 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 25 H 0.07 2.00 6.43 -2.39 -0.02 1.98 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 2.17 4.81 -2.39 -0.01 2.16 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.04 1.55 7.16 -2.39 -0.02 1.54 16 31 H 0.01 0.36 7.42 -2.39 -0.02 0.34 16 32 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -60.18 243.50 5.64 -54.54 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.06 Total: 4.44 kcal Atomic # 6 Polarization: -52.09 SS G_CDS: 2.28 Total: -49.82 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.28 Total: -55.79 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -60.18 5.64 -54.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260373801.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.405 kcal (2) G-P(sol) polarization free energy of solvation -60.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds