Wall clock time and date at job start Mon Mar 30 2020 02:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47205 * 2 1 4 4 C 1.53001 * 109.47181 * 240.00560 * 2 1 3 5 5 C 1.53000 * 109.47181 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47084 * 59.99703 * 5 4 2 7 7 C 1.53008 * 109.47252 * 299.99944 * 6 5 4 8 8 H 1.08997 * 109.46600 * 300.00187 * 7 6 5 9 9 C 1.52992 * 109.47197 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.46721 * 60.00240 * 7 6 5 11 11 H 1.08990 * 109.47267 * 59.99993 * 10 7 6 12 12 C 1.50701 * 109.46728 * 180.02562 * 10 7 6 13 13 H 1.07994 * 120.00224 * 60.01213 * 12 10 7 14 14 C 1.37880 * 119.99512 * 240.01061 * 12 10 7 15 15 N 1.31513 * 119.99934 * 6.31854 * 14 12 10 16 16 Si 1.86800 * 119.99711 * 186.31633 * 14 12 10 17 17 H 1.48494 * 109.47289 * 60.00310 * 16 14 12 18 18 H 1.48504 * 109.46799 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47468 * 299.99836 * 16 14 12 20 20 H 1.08999 * 109.46845 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47161 * 299.99765 * 1 2 3 22 22 H 1.09001 * 109.47041 * 59.99637 * 1 2 3 23 23 H 1.09001 * 109.47294 * 59.99958 * 4 2 1 24 24 H 1.09003 * 109.46919 * 299.99403 * 4 2 1 25 25 H 1.08999 * 109.47313 * 179.97438 * 5 4 2 26 26 H 1.09002 * 109.47344 * 299.99931 * 5 4 2 27 27 H 1.09003 * 109.47488 * 60.00308 * 6 5 4 28 28 H 1.09007 * 109.47228 * 180.02562 * 6 5 4 29 29 H 1.08998 * 109.47476 * 294.76839 * 9 7 6 30 30 H 1.09005 * 109.47080 * 54.76892 * 9 7 6 31 31 H 1.08998 * 109.47508 * 174.77072 * 9 7 6 32 32 H 0.96999 * 119.99607 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4415 -0.0004 7 6 3.5705 -0.7203 1.2489 8 1 3.9335 0.3075 1.2487 9 6 4.0816 -1.4408 2.4981 10 6 2.0405 -0.7209 1.2492 11 1 1.6776 -1.7487 1.2494 12 6 1.5382 -0.0101 2.4794 13 1 1.7986 1.0241 2.6496 14 6 0.7462 -0.6801 3.3876 15 7 0.5312 -1.9699 3.2468 16 14 -0.0214 0.2442 4.8180 17 1 -0.9038 1.3187 4.2967 18 1 -0.8218 -0.6964 5.6426 19 1 1.0507 0.8449 5.6516 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.6767 -0.2072 -2.1393 24 1 1.6767 -1.7488 -1.2493 25 1 3.9334 -1.2347 -2.1394 26 1 3.9330 0.3072 -1.2498 27 1 3.7176 -2.4694 -0.0002 28 1 5.1706 -1.4407 -0.0004 29 1 3.6445 -2.4382 2.5467 30 1 5.1676 -1.5219 2.4520 31 1 3.7967 -0.8758 3.3856 32 1 -0.0263 -2.4411 3.8856 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260373805.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:10 Heat of formation + Delta-G solvation = -43.550673 kcal Electronic energy + Delta-G solvation = -11794.637787 eV Core-core repulsion = 9946.363423 eV Total energy + Delta-G solvation = -1848.274365 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.03992 -32.83274 -32.30431 -30.35622 -26.22613 -25.26810 -23.82376 -20.63443 -19.39618 -18.55381 -16.31257 -14.55187 -13.77358 -13.73945 -13.37351 -12.82614 -12.71496 -11.88629 -11.41689 -11.31762 -11.14363 -10.84768 -10.75487 -10.72221 -10.34553 -9.99331 -9.95685 -9.73491 -9.62317 -9.00224 -8.70937 -8.48625 -8.26857 -5.92088 -3.90662 3.35009 3.40353 3.43267 4.50067 5.36428 5.56187 5.67899 5.73211 6.16346 6.19983 6.36283 6.41344 6.42713 6.49942 6.61723 6.70086 6.79531 6.81865 6.89897 6.92235 7.00628 7.26758 7.38281 7.46394 7.50926 7.56873 7.86654 7.93362 8.10553 8.59714 9.19474 9.69188 11.16819 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.045744 B = 0.016008 C = 0.013280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.952887 B = 1748.666580 C = 2107.934950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 H 0.045 0.955 4 C -0.114 4.114 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.080 4.080 8 H 0.044 0.956 9 C -0.120 4.120 10 C 0.041 3.959 11 H 0.067 0.933 12 C -0.499 4.499 13 H 0.047 0.953 14 C 0.069 3.931 15 N -0.892 5.892 16 Si 0.879 3.121 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.279 1.279 20 H 0.043 0.957 21 H 0.062 0.938 22 H 0.021 0.979 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.018 0.982 31 H 0.058 0.942 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 1.366 -5.241 6.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.063 0.937 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.152 4.152 7 C -0.099 4.099 8 H 0.062 0.938 9 C -0.178 4.178 10 C 0.023 3.977 11 H 0.086 0.914 12 C -0.538 4.538 13 H 0.066 0.934 14 C -0.132 4.132 15 N -0.531 5.531 16 Si 0.707 3.293 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.204 1.204 20 H 0.062 0.938 21 H 0.081 0.919 22 H 0.040 0.960 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.211 1.201 -5.145 6.183 hybrid contribution -0.472 0.498 0.845 1.089 sum 2.738 1.699 -4.300 5.374 Atomic orbital electron populations 1.21584 0.96369 1.00682 0.99474 1.21252 0.95017 0.98438 0.95376 0.93664 1.21648 0.94816 1.00513 0.98179 1.21470 0.96522 0.99836 0.97194 1.21660 0.98238 0.99577 0.95729 1.21230 0.99706 0.96890 0.92081 0.93790 1.21536 0.96257 1.00913 0.99062 1.19013 0.89035 0.98610 0.91079 0.91442 1.20972 1.30065 0.97179 1.05544 0.93423 1.24886 0.96407 0.94621 0.97327 1.69899 1.38940 1.07342 1.36890 0.86876 0.79609 0.79853 0.82950 1.20381 1.21488 1.20424 0.93791 0.91914 0.96026 0.94046 0.92775 0.93736 0.92949 0.92756 0.94054 0.93316 0.96247 0.92295 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 8.95 37.16 0.33 -2.32 16 2 C -0.08 -1.76 2.24 -90.62 -0.20 -1.97 16 3 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -2.12 5.20 -26.73 -0.14 -2.26 16 5 C -0.11 -1.94 5.92 -26.73 -0.16 -2.10 16 6 C -0.11 -2.14 5.20 -26.73 -0.14 -2.28 16 7 C -0.08 -1.74 2.24 -90.62 -0.20 -1.94 16 8 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 9 C -0.12 -2.62 8.84 37.15 0.33 -2.29 16 10 C 0.04 1.00 1.50 -91.77 -0.14 0.86 16 11 H 0.07 1.85 6.93 -51.93 -0.36 1.49 16 12 C -0.50 -13.30 5.88 -34.44 -0.20 -13.50 16 13 H 0.05 1.29 7.82 -52.49 -0.41 0.88 16 14 C 0.07 1.87 5.45 -17.82 -0.10 1.78 16 15 N -0.89 -25.34 12.62 55.43 0.70 -24.64 16 16 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 21 H 0.06 1.45 7.22 -51.93 -0.37 1.08 16 22 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 1.38 7.41 -51.93 -0.38 0.99 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 250.31 15.07 3.77 3.77 Total: -1.00 -26.99 250.31 -6.91 -33.90 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -5.74 Total: -3.24 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -0.62 Total: -26.01 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.70 Total: -24.64 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.99 -6.91 -33.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260373805.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.650 kcal (2) G-P(sol) polarization free energy of solvation -26.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds