Wall clock time and date at job start Mon Mar 30 2020 02:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 108.87299 * 2 1 4 4 C 1.54239 * 108.89497 * 241.40126 * 2 1 3 5 5 C 1.50477 * 108.51776 * 159.24996 * 4 2 1 6 6 C 1.54072 * 112.49506 * 94.15269 * 5 4 2 7 7 C 1.54072 * 112.81743 * 318.28145 * 6 5 4 8 8 H 1.08997 * 108.87567 * 78.96515 * 7 6 5 9 9 C 1.50704 * 108.87529 * 197.50549 * 7 6 5 10 10 H 1.07999 * 119.99816 * 115.91468 * 9 7 6 11 11 C 1.37873 * 120.00096 * 295.91273 * 9 7 6 12 12 N 1.31514 * 120.00230 * 160.17981 * 11 9 7 13 13 Si 1.86802 * 120.00087 * 340.18139 * 11 9 7 14 14 H 1.48492 * 109.47255 * 269.99919 * 13 11 9 15 15 H 1.48508 * 109.46982 * 149.99893 * 13 11 9 16 16 H 1.48496 * 109.47210 * 30.00229 * 13 11 9 17 17 C 1.50473 * 112.42146 * 318.23454 * 7 6 5 18 18 C 1.45541 * 108.89815 * 118.50964 * 2 1 3 19 19 H 1.09005 * 109.47072 * 178.60341 * 1 2 3 20 20 H 1.09003 * 109.47060 * 298.59960 * 1 2 3 21 21 H 1.09001 * 109.47172 * 58.60308 * 1 2 3 22 22 H 1.08996 * 109.62871 * 39.53916 * 4 2 1 23 23 H 1.09001 * 109.62631 * 278.95672 * 4 2 1 24 24 H 1.08993 * 108.87584 * 333.37497 * 5 4 2 25 25 H 1.08994 * 108.87913 * 214.92475 * 5 4 2 26 26 H 1.08998 * 108.81089 * 197.41951 * 6 5 4 27 27 H 1.09003 * 108.72702 * 79.08523 * 6 5 4 28 28 H 0.97003 * 119.99778 * 354.74684 * 12 11 9 29 29 H 1.08991 * 109.62968 * 213.90988 * 17 7 6 30 30 H 1.09002 * 109.62305 * 334.48997 * 17 7 6 31 31 H 1.09001 * 108.89544 * 303.44831 * 18 2 1 32 32 H 1.09000 * 108.89640 * 62.03180 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8826 1.0314 0.0000 4 6 2.0295 -0.6985 -1.2812 5 6 3.4466 -0.2643 -1.5408 6 6 4.4804 -1.2411 -0.9483 7 6 4.0936 -1.7404 0.4570 8 1 3.3424 -2.5239 0.3584 9 6 5.3159 -2.3186 1.1224 10 1 5.7160 -1.8559 2.0125 11 6 5.9233 -3.4383 0.5950 12 7 7.1693 -3.7196 0.9080 13 14 4.9766 -4.5559 -0.5644 14 1 4.2809 -5.6076 0.2198 15 1 5.9199 -5.1925 -1.5186 16 1 3.9765 -3.7561 -1.3163 17 6 3.5408 -0.6421 1.3243 18 6 2.0014 -0.6572 1.2100 19 1 -0.3633 -1.0274 -0.0250 20 1 -0.3633 0.4919 0.9023 21 1 -0.3633 0.5354 -0.8772 22 1 1.3990 -0.4132 -2.1233 23 1 1.9968 -1.7795 -1.1454 24 1 3.5998 0.7210 -1.1007 25 1 3.6029 -0.1957 -2.6173 26 1 5.4456 -0.7382 -0.8894 27 1 4.5720 -2.0996 -1.6136 28 1 7.6853 -3.1006 1.4480 29 1 3.8322 -0.8121 2.3606 30 1 3.9252 0.3202 0.9860 31 1 1.5779 -0.1484 2.0759 32 1 1.6581 -1.6918 1.2064 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260374939.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:04 Heat of formation + Delta-G solvation = -35.469842 kcal Electronic energy + Delta-G solvation = -11690.356775 eV Core-core repulsion = 9842.432821 eV Total energy + Delta-G solvation = -1847.923953 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.58791 -33.98892 -31.95182 -31.19821 -27.40956 -24.88767 -23.08600 -21.55225 -19.74442 -18.27328 -17.27081 -14.95291 -14.28391 -13.92227 -13.76663 -13.39735 -12.74748 -12.17910 -12.15629 -11.91701 -11.45203 -11.33136 -10.94814 -10.59047 -10.12831 -9.99974 -9.89187 -9.66265 -9.61450 -9.33876 -9.15085 -8.68052 -8.10045 -6.33782 -3.94720 3.47317 3.48720 3.65147 4.59142 5.06429 5.19104 5.34692 5.35825 5.72013 5.81618 5.93524 6.03023 6.10433 6.13935 6.17356 6.28443 6.34727 6.44893 6.61107 6.71433 6.75147 6.85969 6.89418 7.05247 7.08321 7.27623 7.58465 7.74442 8.34130 8.47527 9.00951 9.71376 11.01761 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.052882 B = 0.013854 C = 0.013111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.356366 B = 2020.520212 C = 2135.045391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.060 0.940 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.117 4.117 7 C 0.021 3.979 8 H 0.019 0.981 9 C -0.599 4.599 10 H 0.053 0.947 11 C 0.031 3.969 12 N -0.910 5.910 13 Si 1.039 2.961 14 H -0.288 1.288 15 H -0.289 1.289 16 H -0.268 1.268 17 C -0.094 4.094 18 C -0.116 4.116 19 H 0.052 0.948 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.267 0.733 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.996 6.054 -3.650 13.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.079 0.921 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.154 4.154 7 C 0.002 3.998 8 H 0.037 0.963 9 C -0.637 4.637 10 H 0.071 0.929 11 C -0.174 4.174 12 N -0.545 5.545 13 Si 0.867 3.133 14 H -0.215 1.215 15 H -0.216 1.216 16 H -0.194 1.194 17 C -0.131 4.131 18 C -0.153 4.153 19 H 0.071 0.929 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.883 4.638 -4.497 12.656 hybrid contribution 0.013 1.421 0.891 1.677 sum -10.870 6.058 -3.606 12.956 Atomic orbital electron populations 1.21960 0.96376 1.01399 1.00787 1.20061 0.94568 0.99724 0.96013 0.92141 1.21369 0.96217 1.01035 0.96030 1.21413 0.95318 0.99870 0.99080 1.22443 0.97015 0.97395 0.98589 1.18783 0.96359 0.93547 0.91079 0.96307 1.22187 1.13054 1.14965 1.13485 0.92880 1.25750 0.95767 0.97549 0.98306 1.70806 1.07563 1.40148 1.35934 0.84166 0.76155 0.76071 0.76887 1.21521 1.21571 1.19392 1.21314 0.92301 0.99256 1.00244 1.20633 0.97931 1.00492 0.96277 0.92929 0.93278 0.93308 0.93100 0.91539 0.93084 0.93927 0.93005 0.93471 0.92344 0.92767 0.93579 0.93704 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.97 37.16 0.33 -1.55 16 2 C -0.09 -1.31 2.22 -93.49 -0.21 -1.52 16 3 H 0.06 0.91 7.47 -51.93 -0.39 0.53 16 4 C -0.11 -1.78 4.98 -27.34 -0.14 -1.92 16 5 C -0.12 -2.13 5.31 -27.43 -0.15 -2.28 16 6 C -0.12 -2.58 4.70 -25.61 -0.12 -2.70 16 7 C 0.02 0.51 1.22 -92.47 -0.11 0.40 16 8 H 0.02 0.46 5.05 -51.93 -0.26 0.20 16 9 C -0.60 -17.12 8.51 -34.44 -0.29 -17.42 16 10 H 0.05 1.64 7.74 -52.49 -0.41 1.23 16 11 C 0.03 0.90 5.30 -17.82 -0.09 0.81 16 12 N -0.91 -28.54 13.70 55.43 0.76 -27.79 16 13 Si 1.04 25.71 26.52 -169.99 -4.51 21.21 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.27 -6.09 5.32 56.52 0.30 -5.79 16 17 C -0.09 -1.95 5.11 -27.28 -0.14 -2.09 16 18 C -0.12 -2.00 4.45 -29.53 -0.13 -2.13 16 19 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 21 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 22 H 0.05 0.72 7.97 -51.93 -0.41 0.31 16 23 H 0.07 1.19 6.97 -51.93 -0.36 0.83 16 24 H 0.05 0.88 6.63 -51.93 -0.34 0.53 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 1.21 7.97 -51.93 -0.41 0.80 16 27 H 0.05 1.07 5.11 -51.93 -0.27 0.81 16 28 H 0.27 8.33 8.73 -40.82 -0.36 7.97 16 29 H 0.05 1.19 7.53 -51.93 -0.39 0.80 16 30 H 0.05 0.93 6.97 -51.93 -0.36 0.57 16 31 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.06 1.02 7.46 -51.93 -0.39 0.63 16 LS Contribution 236.71 15.07 3.57 3.57 Total: -1.00 -29.67 236.71 -6.59 -36.25 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -5.36 Total: -2.84 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: -1.05 Total: -30.40 kcal Atomic # 7 Polarization: -28.54 SS G_CDS: 0.76 Total: -27.79 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -4.51 Total: 21.21 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.67 -6.59 -36.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374939.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.781 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds