Wall clock time and date at job start Mon Mar 30 2020 02:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.78233 * 2 1 4 4 C 1.50546 * 109.57981 * 120.56792 * 2 1 3 5 5 C 1.54069 * 112.41623 * 213.92454 * 4 2 1 6 6 C 1.54056 * 112.81521 * 318.27597 * 5 4 2 7 7 C 1.50476 * 112.50048 * 318.28454 * 6 5 4 8 8 H 1.09002 * 109.62685 * 334.44737 * 7 6 5 9 9 C 1.50697 * 109.79099 * 213.95724 * 7 6 5 10 10 H 1.07998 * 119.99864 * 240.87270 * 9 7 6 11 11 C 1.37874 * 120.00162 * 60.87698 * 9 7 6 12 12 N 1.31519 * 119.99874 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00130 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47036 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47129 * 119.99875 * 13 11 9 16 16 H 1.48496 * 109.46794 * 239.99477 * 13 11 9 17 17 C 1.54245 * 108.51856 * 94.15187 * 7 6 5 18 18 C 1.45542 * 112.40792 * 280.00900 * 17 7 6 19 19 H 1.09000 * 109.47143 * 180.48065 * 1 2 3 20 20 H 1.08995 * 109.47383 * 300.47850 * 1 2 3 21 21 H 1.09003 * 109.47285 * 60.48010 * 1 2 3 22 22 H 1.09000 * 108.92627 * 93.16898 * 4 2 1 23 23 H 1.09006 * 108.83640 * 334.61887 * 4 2 1 24 24 H 1.09000 * 108.81197 * 197.41864 * 5 4 2 25 25 H 1.09001 * 108.72588 * 79.08149 * 5 4 2 26 26 H 1.09003 * 108.87949 * 197.50496 * 6 5 4 27 27 H 1.09005 * 108.87812 * 79.06574 * 6 5 4 28 28 H 0.96997 * 119.99955 * 180.02562 * 12 11 9 29 29 H 1.08997 * 108.89530 * 159.25760 * 17 7 6 30 30 H 1.09002 * 108.89487 * 40.76592 * 17 7 6 31 31 H 1.09002 * 108.89596 * 182.69054 * 18 17 7 32 32 H 1.09003 * 108.89788 * 301.28088 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0345 -0.7213 1.2213 5 6 3.3448 -0.1170 1.7611 6 6 4.3375 0.2528 0.6426 7 6 4.4025 -0.7922 -0.4383 8 1 4.1133 -1.7603 -0.0294 9 6 5.8039 -0.8724 -0.9867 10 1 5.9884 -0.6622 -2.0298 11 6 6.8504 -1.2144 -0.1568 12 7 6.6258 -1.4701 1.1136 13 14 8.5876 -1.3132 -0.8364 14 1 8.5724 -0.9818 -2.2838 15 1 9.4566 -0.3481 -0.1162 16 1 9.1147 -2.6888 -0.6495 17 6 3.4273 -0.3932 -1.5647 18 6 2.0481 -0.7369 -1.2521 19 1 -0.3633 -1.0276 0.0086 20 1 -0.3634 0.5212 0.8856 21 1 -0.3634 0.5064 -0.8943 22 1 2.2066 -1.7675 0.9681 23 1 1.2742 -0.6681 2.0006 24 1 3.8177 -0.8400 2.4258 25 1 3.1072 0.7810 2.3314 26 1 5.3299 0.3729 1.0772 27 1 4.0319 1.2005 0.1990 28 1 7.3621 -1.7103 1.6975 29 1 3.7193 -0.9046 -2.4819 30 1 3.4952 0.6827 -1.7258 31 1 1.4177 -0.4751 -2.1019 32 1 1.9819 -1.8115 -1.0818 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260374943.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:06 Heat of formation + Delta-G solvation = -36.806539 kcal Electronic energy + Delta-G solvation = -11647.182450 eV Core-core repulsion = 9799.200533 eV Total energy + Delta-G solvation = -1847.981917 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.25221 -33.74227 -31.47949 -31.20754 -27.21756 -25.03039 -22.64423 -22.05852 -19.38761 -18.12763 -16.21766 -14.65533 -14.14480 -13.84282 -13.76711 -13.19099 -12.48832 -12.22416 -12.06386 -11.66303 -11.14776 -10.85476 -10.79565 -10.66165 -10.31832 -10.27020 -9.77022 -9.60165 -9.31426 -9.15252 -8.79657 -8.63204 -8.16404 -5.90589 -3.95823 3.33358 3.41467 3.45564 4.50264 5.30263 5.38200 5.44175 5.51422 5.91104 5.95643 6.19575 6.23989 6.25916 6.28614 6.38291 6.48111 6.69461 6.77572 6.83767 6.97906 7.02445 7.12155 7.17870 7.27597 7.42145 7.73305 7.86841 8.13935 8.23483 8.61230 9.10481 9.67870 11.15413 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.071521 B = 0.011934 C = 0.010746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.400935 B = 2345.638044 C = 2605.054545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.068 0.932 4 C -0.108 4.108 5 C -0.109 4.109 6 C -0.095 4.095 7 C 0.053 3.947 8 H 0.027 0.973 9 C -0.511 4.511 10 H 0.053 0.947 11 C 0.058 3.942 12 N -0.887 5.887 13 Si 0.886 3.114 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.286 1.286 17 C -0.115 4.115 18 C -0.102 4.102 19 H 0.049 0.951 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.056 0.944 25 H 0.031 0.969 26 H 0.078 0.922 27 H 0.019 0.981 28 H 0.257 0.743 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.047 2.127 -0.704 8.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.146 4.146 5 C -0.146 4.146 6 C -0.133 4.133 7 C 0.035 3.965 8 H 0.045 0.955 9 C -0.549 4.549 10 H 0.071 0.929 11 C -0.142 4.142 12 N -0.526 5.526 13 Si 0.714 3.286 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.153 4.153 18 C -0.140 4.140 19 H 0.068 0.932 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.953 2.074 -0.543 8.237 hybrid contribution 1.032 -0.082 -0.257 1.066 sum -6.921 1.992 -0.800 7.246 Atomic orbital electron populations 1.21896 0.96463 1.01025 1.00637 1.20905 0.93733 1.00237 0.95856 0.91308 1.21380 0.96889 1.00179 0.96112 1.21861 0.94852 0.98784 0.99126 1.21313 0.98895 0.97207 0.95913 1.18409 0.92575 0.94897 0.90616 0.95454 1.21371 0.92303 1.45813 0.95415 0.92907 1.24967 0.98699 0.95620 0.94939 1.69981 1.31239 1.47363 1.04065 0.86639 0.85295 0.77508 0.79164 1.19903 1.21175 1.21179 1.20609 0.94409 0.99721 1.00528 1.20545 0.97564 0.99725 0.96136 0.93190 0.93367 0.93389 0.92407 0.94006 0.92492 0.94977 0.90352 0.96244 0.93319 0.93696 0.94095 0.94198 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.86 37.16 0.33 -1.64 16 2 C -0.09 -1.51 2.40 -91.20 -0.22 -1.73 16 3 H 0.07 1.23 6.97 -51.93 -0.36 0.87 16 4 C -0.11 -1.98 4.89 -27.40 -0.13 -2.11 16 5 C -0.11 -2.27 5.85 -25.62 -0.15 -2.42 16 6 C -0.10 -2.29 4.50 -27.44 -0.12 -2.41 16 7 C 0.05 1.34 1.77 -92.38 -0.16 1.18 16 8 H 0.03 0.75 6.98 -51.93 -0.36 0.39 16 9 C -0.51 -14.28 8.43 -34.44 -0.29 -14.57 16 10 H 0.05 1.47 7.70 -52.49 -0.40 1.07 16 11 C 0.06 1.64 5.04 -17.82 -0.09 1.55 16 12 N -0.89 -25.59 11.71 55.43 0.65 -24.94 16 13 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 C -0.12 -2.47 4.64 -29.60 -0.14 -2.61 16 18 C -0.10 -1.86 4.69 -29.60 -0.14 -2.00 16 19 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 20 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 21 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 22 H 0.06 1.12 6.63 -51.93 -0.34 0.78 16 23 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 2.13 6.00 -51.93 -0.31 1.82 16 27 H 0.02 0.44 6.63 -51.93 -0.34 0.09 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.04 0.97 7.92 -51.93 -0.41 0.56 16 30 H 0.04 0.86 7.47 -51.93 -0.39 0.47 16 31 H 0.04 0.65 7.97 -51.93 -0.41 0.23 16 32 H 0.05 0.96 7.46 -51.93 -0.39 0.58 16 LS Contribution 242.03 15.07 3.65 3.65 Total: -1.00 -28.00 242.03 -7.22 -35.22 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -5.37 Total: -3.73 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -1.12 Total: -26.76 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.65 Total: -24.94 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.00 -7.22 -35.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374943.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.589 kcal (2) G-P(sol) polarization free energy of solvation -28.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds