Wall clock time and date at job start Mon Mar 30 2020 02:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.78233 * 2 1 4 4 C 1.50546 * 109.57981 * 120.56792 * 2 1 3 5 5 C 1.54069 * 112.41623 * 213.92454 * 4 2 1 6 6 C 1.54056 * 112.81521 * 318.27597 * 5 4 2 7 7 C 1.50476 * 112.50048 * 318.28454 * 6 5 4 8 8 H 1.09002 * 109.62685 * 334.44737 * 7 6 5 9 9 C 1.50697 * 109.79099 * 213.95724 * 7 6 5 10 10 H 1.07998 * 119.99864 * 240.87270 * 9 7 6 11 11 C 1.37874 * 120.00162 * 60.87698 * 9 7 6 12 12 N 1.31519 * 119.99874 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00130 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47036 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47129 * 119.99875 * 13 11 9 16 16 H 1.48496 * 109.46794 * 239.99477 * 13 11 9 17 17 C 1.54245 * 108.51856 * 94.15187 * 7 6 5 18 18 C 1.45542 * 112.40792 * 280.00900 * 17 7 6 19 19 H 1.09000 * 109.47143 * 180.48065 * 1 2 3 20 20 H 1.08995 * 109.47383 * 300.47850 * 1 2 3 21 21 H 1.09003 * 109.47285 * 60.48010 * 1 2 3 22 22 H 1.09000 * 108.92627 * 93.16898 * 4 2 1 23 23 H 1.09006 * 108.83640 * 334.61887 * 4 2 1 24 24 H 1.09000 * 108.81197 * 197.41864 * 5 4 2 25 25 H 1.09001 * 108.72588 * 79.08149 * 5 4 2 26 26 H 1.09003 * 108.87949 * 197.50496 * 6 5 4 27 27 H 1.09005 * 108.87812 * 79.06574 * 6 5 4 28 28 H 0.96997 * 119.99955 * 180.02562 * 12 11 9 29 29 H 1.08997 * 108.89530 * 159.25760 * 17 7 6 30 30 H 1.09002 * 108.89487 * 40.76592 * 17 7 6 31 31 H 1.09002 * 108.89596 * 182.69054 * 18 17 7 32 32 H 1.09003 * 108.89788 * 301.28088 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0345 -0.7213 1.2213 5 6 3.3448 -0.1170 1.7611 6 6 4.3375 0.2528 0.6426 7 6 4.4025 -0.7922 -0.4383 8 1 4.1133 -1.7603 -0.0294 9 6 5.8039 -0.8724 -0.9867 10 1 5.9884 -0.6622 -2.0298 11 6 6.8504 -1.2144 -0.1568 12 7 6.6258 -1.4701 1.1136 13 14 8.5876 -1.3132 -0.8364 14 1 8.5724 -0.9818 -2.2838 15 1 9.4566 -0.3481 -0.1162 16 1 9.1147 -2.6888 -0.6495 17 6 3.4273 -0.3932 -1.5647 18 6 2.0481 -0.7369 -1.2521 19 1 -0.3633 -1.0276 0.0086 20 1 -0.3634 0.5212 0.8856 21 1 -0.3634 0.5064 -0.8943 22 1 2.2066 -1.7675 0.9681 23 1 1.2742 -0.6681 2.0006 24 1 3.8177 -0.8400 2.4258 25 1 3.1072 0.7810 2.3314 26 1 5.3299 0.3729 1.0772 27 1 4.0319 1.2005 0.1990 28 1 7.3621 -1.7103 1.6975 29 1 3.7193 -0.9046 -2.4819 30 1 3.4952 0.6827 -1.7258 31 1 1.4177 -0.4751 -2.1019 32 1 1.9819 -1.8115 -1.0818 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260374943.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:06 Heat of formation + Delta-G solvation = -51.409807 kcal Electronic energy + Delta-G solvation = -11647.815695 eV Core-core repulsion = 9799.200533 eV Total energy + Delta-G solvation = -1848.615162 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.87665 -35.59029 -33.16381 -33.05614 -28.84159 -26.85489 -24.43243 -23.63625 -21.01413 -19.86800 -18.31521 -16.67007 -15.66820 -15.50238 -15.29144 -14.87549 -14.06347 -13.97600 -13.59214 -13.23360 -12.95055 -12.67094 -12.51328 -12.35828 -12.05942 -12.03525 -11.32358 -11.12530 -11.01800 -10.95363 -10.68642 -10.62208 -10.24339 -8.05960 -6.18756 1.38762 1.40674 1.51855 2.44495 3.21299 3.87848 4.03016 4.17999 4.49208 4.55873 4.62282 4.75623 4.79114 4.86420 4.94797 5.06976 5.08212 5.22666 5.29050 5.38779 5.39827 5.52359 5.56166 5.65934 5.69492 5.75067 5.82533 6.10264 6.23374 6.49798 6.97143 7.48442 8.98881 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.071521 B = 0.011934 C = 0.010746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.400935 B = 2345.638044 C = 2605.054545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.063 0.937 4 C -0.103 4.103 5 C -0.105 4.105 6 C -0.089 4.089 7 C 0.051 3.949 8 H -0.004 1.004 9 C -0.535 4.535 10 H 0.047 0.953 11 C 0.010 3.990 12 N -0.912 5.912 13 Si 0.949 3.051 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.281 1.281 17 C -0.106 4.106 18 C -0.102 4.102 19 H 0.056 0.944 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.040 0.960 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.028 0.972 28 H 0.258 0.742 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.267 2.723 -1.179 9.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.081 0.919 4 C -0.140 4.140 5 C -0.142 4.142 6 C -0.127 4.127 7 C 0.033 3.967 8 H 0.015 0.985 9 C -0.573 4.573 10 H 0.066 0.934 11 C -0.188 4.188 12 N -0.552 5.552 13 Si 0.775 3.225 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.207 1.207 17 C -0.144 4.144 18 C -0.140 4.140 19 H 0.075 0.925 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.058 0.942 23 H 0.088 0.912 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.181 2.671 -1.026 9.616 hybrid contribution 1.438 -0.271 -0.104 1.467 sum -7.743 2.401 -1.130 8.185 Atomic orbital electron populations 1.21827 0.93366 1.01978 1.02161 1.20881 0.96273 0.99186 0.94143 0.91899 1.21346 0.95973 0.98995 0.97731 1.21781 0.95462 0.99173 0.97821 1.21151 0.97854 0.97297 0.96367 1.18372 0.92427 0.93775 0.92165 0.98547 1.21752 0.94124 1.46133 0.95337 0.93444 1.25718 1.02557 0.95297 0.95234 1.70108 1.32290 1.47727 1.05049 0.85641 0.80568 0.77571 0.78692 1.19312 1.20655 1.20726 1.20494 0.95601 0.99641 0.98620 1.20514 0.95847 0.99575 0.98048 0.92526 0.91933 0.91893 0.94153 0.91250 0.95025 0.92902 0.94175 0.95294 0.93307 0.94491 0.93797 0.91420 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.86 71.98 0.64 -2.57 16 2 C -0.09 -2.71 2.40 -11.17 -0.03 -2.74 16 3 H 0.06 2.07 6.97 -2.39 -0.02 2.05 16 4 C -0.10 -3.61 4.89 30.16 0.15 -3.46 16 5 C -0.10 -4.36 5.85 31.31 0.18 -4.17 16 6 C -0.09 -4.31 4.50 30.13 0.14 -4.18 16 7 C 0.05 2.62 1.77 -11.94 -0.02 2.60 16 8 H 0.00 -0.20 6.98 -2.39 -0.02 -0.22 16 9 C -0.54 -30.53 8.43 25.60 0.22 -30.31 16 10 H 0.05 2.68 7.70 -2.91 -0.02 2.66 16 11 C 0.01 0.59 5.04 84.65 0.43 1.02 16 12 N -0.91 -53.92 11.71 21.45 0.25 -53.67 16 13 Si 0.95 44.78 29.54 68.60 2.03 46.80 16 14 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 17 C -0.11 -4.49 4.64 28.74 0.13 -4.36 16 18 C -0.10 -3.54 4.69 28.74 0.13 -3.40 16 19 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 20 H 0.06 1.31 8.11 -2.39 -0.02 1.29 16 21 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 22 H 0.04 1.54 6.63 -2.39 -0.02 1.53 16 23 H 0.07 2.05 7.68 -2.38 -0.02 2.03 16 24 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.04 2.24 6.00 -2.39 -0.01 2.22 16 27 H 0.03 1.31 6.63 -2.38 -0.02 1.29 16 28 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.04 1.58 7.92 -2.39 -0.02 1.56 16 30 H 0.04 1.80 7.47 -2.39 -0.02 1.79 16 31 H 0.07 1.98 7.97 -2.39 -0.02 1.96 16 32 H 0.05 1.64 7.46 -2.39 -0.02 1.62 16 Total: -1.00 -60.51 242.03 5.30 -55.20 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 1.06 Total: 3.24 kcal Atomic # 6 Polarization: -53.54 SS G_CDS: 1.97 Total: -51.58 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.25 Total: -53.67 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -60.51 5.30 -55.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374943.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.792 kcal (2) G-P(sol) polarization free energy of solvation -60.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds