Wall clock time and date at job start Mon Mar 30 2020 02:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 108.85698 * 2 1 4 4 C 1.50474 * 108.88033 * 118.56300 * 2 1 3 5 5 C 1.54240 * 108.52507 * 214.92625 * 4 2 1 6 6 C 1.45540 * 112.40509 * 280.01286 * 5 4 2 7 7 C 1.54238 * 112.40534 * 61.93721 * 6 5 4 8 8 H 1.08998 * 109.63188 * 39.91562 * 7 6 5 9 9 C 1.50699 * 109.62664 * 160.30433 * 7 6 5 10 10 H 1.07999 * 120.00803 * 119.99965 * 9 7 6 11 11 C 1.37881 * 119.99889 * 299.99786 * 9 7 6 12 12 N 1.31520 * 120.00186 * 180.02562 * 11 9 7 13 13 Si 1.86798 * 120.00030 * 0.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 C 1.50470 * 108.51864 * 280.00988 * 7 6 5 18 18 C 1.54064 * 112.49934 * 94.15735 * 17 7 6 19 19 H 1.09002 * 109.46923 * 301.43700 * 1 2 3 20 20 H 1.09002 * 109.47421 * 61.43181 * 1 2 3 21 21 H 1.08995 * 109.47363 * 181.44203 * 1 2 3 22 22 H 1.08996 * 109.62990 * 95.21456 * 4 2 1 23 23 H 1.09003 * 109.62178 * 334.63720 * 4 2 1 24 24 H 1.09007 * 108.89329 * 159.25569 * 5 4 2 25 25 H 1.09001 * 108.81837 * 40.71497 * 5 4 2 26 26 H 1.09007 * 108.89103 * 301.18167 * 6 5 4 27 27 H 1.08996 * 108.81686 * 182.64200 * 6 5 4 28 28 H 0.96998 * 120.00124 * 180.02562 * 12 11 9 29 29 H 1.09003 * 108.87419 * 214.93467 * 17 7 6 30 30 H 1.09007 * 108.87992 * 333.37202 * 17 7 6 31 31 H 1.09001 * 108.81459 * 197.42222 * 18 17 7 32 32 H 1.08994 * 108.72683 * 79.08288 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8823 1.0315 0.0000 4 6 2.0169 -0.6807 1.2505 5 6 3.3100 0.0185 1.7173 6 6 4.4788 -0.4197 0.9688 7 6 4.3713 -0.0913 -0.5344 8 1 3.9264 0.8954 -0.6627 9 6 5.7438 -0.1125 -1.1565 10 1 5.9618 -0.7999 -1.9603 11 6 6.7212 0.7459 -0.6994 12 7 7.9188 0.7278 -1.2426 13 14 6.3444 1.9346 0.6915 14 1 6.6529 1.2882 1.9924 15 1 4.9067 2.3042 0.6510 16 1 7.1741 3.1565 0.5369 17 6 3.5032 -1.1309 -1.1898 18 6 2.0284 -0.6947 -1.2817 19 1 -0.3633 0.5360 0.8768 20 1 -0.3634 0.4914 -0.9025 21 1 -0.3634 -1.0273 0.0259 22 1 2.2236 -1.7299 1.0395 23 1 1.2575 -0.6036 2.0286 24 1 3.4662 -0.1975 2.7743 25 1 3.1930 1.0948 1.5909 26 1 4.5903 -1.4975 1.0876 27 1 5.3618 0.0731 1.3756 28 1 8.6065 1.3314 -0.9208 29 1 3.8782 -1.3203 -2.1956 30 1 3.5627 -2.0543 -0.6137 31 1 1.4124 -1.5747 -1.4667 32 1 1.9185 -0.0068 -2.1199 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260374947.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:07 Heat of formation + Delta-G solvation = -29.292337 kcal Electronic energy + Delta-G solvation = -11733.275699 eV Core-core repulsion = 9885.619622 eV Total energy + Delta-G solvation = -1847.656077 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.56332 -33.91736 -32.09762 -31.31962 -27.49737 -25.22535 -23.21708 -21.72313 -19.81704 -18.13296 -16.68714 -15.25841 -14.48425 -14.10423 -13.55541 -13.22698 -12.64063 -12.57104 -12.28709 -12.18181 -11.40257 -11.29522 -10.95681 -10.79419 -10.36463 -10.03120 -9.88767 -9.78136 -9.51664 -9.36063 -9.02283 -8.82044 -8.44204 -6.00350 -3.98070 3.31756 3.42377 3.45603 4.47734 5.11762 5.21601 5.26869 5.37916 5.65244 5.77640 5.89149 5.97133 6.04037 6.13181 6.18629 6.19781 6.31557 6.44252 6.49162 6.73082 6.76431 6.81289 6.86956 7.00036 7.10704 7.22109 7.44377 7.70306 7.89692 8.61664 9.04819 9.63444 11.12860 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.054200 B = 0.014748 C = 0.013035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.482394 B = 1898.055069 C = 2147.470742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.127 4.127 7 C 0.019 3.981 8 H 0.028 0.972 9 C -0.509 4.509 10 H 0.072 0.928 11 C 0.066 3.934 12 N -0.905 5.905 13 Si 0.887 3.113 14 H -0.280 1.280 15 H -0.262 1.262 16 H -0.300 1.300 17 C -0.098 4.098 18 C -0.109 4.109 19 H 0.048 0.952 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.262 0.738 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.125 -1.212 4.407 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.144 4.144 5 C -0.155 4.155 6 C -0.165 4.165 7 C 0.000 4.000 8 H 0.046 0.954 9 C -0.547 4.547 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.544 5.544 13 Si 0.717 3.283 14 H -0.207 1.207 15 H -0.187 1.187 16 H -0.228 1.228 17 C -0.136 4.136 18 C -0.147 4.147 19 H 0.067 0.933 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.952 -1.135 4.400 12.787 hybrid contribution 0.057 0.669 0.806 1.049 sum -11.895 -0.466 5.206 12.993 Atomic orbital electron populations 1.21955 0.96375 1.01071 1.00908 1.20946 0.94185 1.00550 0.95371 0.91433 1.21364 0.96631 1.00126 0.96308 1.20605 0.95969 1.00145 0.98749 1.20915 0.96018 1.00605 0.98914 1.18877 0.95706 0.94952 0.90455 0.95406 1.21236 0.93911 1.20606 1.18953 0.91035 1.25067 0.94899 0.96910 0.96628 1.69917 1.03201 1.38679 1.42616 0.86859 0.78736 0.80098 0.82608 1.20696 1.18687 1.22781 1.21323 0.92488 0.98873 1.00883 1.21998 0.97332 0.99033 0.96323 0.93292 0.93228 0.93147 0.91819 0.92924 0.93832 0.92893 0.93021 0.93328 0.92851 0.92602 0.93679 0.93504 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.79 37.15 0.33 -1.53 16 2 C -0.09 -1.45 2.21 -91.33 -0.20 -1.65 16 3 H 0.07 1.17 6.63 -51.93 -0.34 0.82 16 4 C -0.11 -1.68 5.13 -27.34 -0.14 -1.82 16 5 C -0.12 -2.15 5.26 -29.60 -0.16 -2.31 16 6 C -0.13 -2.78 3.85 -29.60 -0.11 -2.90 16 7 C 0.02 0.45 1.34 -92.39 -0.12 0.32 16 8 H 0.03 0.68 6.08 -51.93 -0.32 0.37 16 9 C -0.51 -14.56 9.04 -34.44 -0.31 -14.87 16 10 H 0.07 2.21 7.69 -52.49 -0.40 1.80 16 11 C 0.07 1.93 5.43 -17.82 -0.10 1.84 16 12 N -0.91 -28.30 13.96 55.43 0.77 -27.53 16 13 Si 0.89 22.51 24.45 -169.99 -4.16 18.35 16 14 H -0.28 -6.94 6.77 56.52 0.38 -6.55 16 15 H -0.26 -6.33 6.16 56.52 0.35 -5.99 16 16 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 17 C -0.10 -1.99 4.87 -27.44 -0.13 -2.13 16 18 C -0.11 -1.83 5.23 -25.62 -0.13 -1.97 16 19 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 1.00 6.98 -51.93 -0.36 0.64 16 23 H 0.05 0.72 7.67 -51.93 -0.40 0.32 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.05 1.01 7.08 -51.93 -0.37 0.64 16 26 H 0.05 1.09 7.47 -51.92 -0.39 0.70 16 27 H 0.05 1.16 3.55 -51.93 -0.18 0.98 16 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.06 1.19 7.48 -51.93 -0.39 0.80 16 30 H 0.04 0.88 6.63 -51.92 -0.34 0.53 16 31 H 0.05 0.70 7.98 -51.93 -0.41 0.28 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 233.80 15.07 3.52 3.52 Total: -1.00 -29.80 233.80 -6.17 -35.97 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -5.23 Total: -3.30 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: -1.08 Total: -27.02 kcal Atomic # 7 Polarization: -28.30 SS G_CDS: 0.77 Total: -27.53 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.16 Total: 18.35 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.80 -6.17 -35.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374947.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.675 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds