Wall clock time and date at job start Mon Mar 30 2020 02:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.78680 * 2 1 4 4 C 1.54244 * 109.62524 * 239.51968 * 2 1 3 5 5 C 1.45540 * 112.40701 * 160.29781 * 4 2 1 6 6 C 1.54371 * 112.33558 * 61.96733 * 5 4 2 7 7 C 1.50476 * 108.45813 * 279.90174 * 6 5 4 8 8 H 1.09007 * 108.87732 * 333.54155 * 7 6 5 9 9 C 1.50694 * 108.88024 * 214.99619 * 7 6 5 10 10 H 1.08000 * 120.00563 * 238.55871 * 9 7 6 11 11 C 1.37885 * 119.99902 * 58.56034 * 9 7 6 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 C 1.54066 * 112.42043 * 94.26723 * 7 6 5 18 18 C 1.50473 * 109.63085 * 120.49610 * 2 1 3 19 19 H 1.09001 * 109.46803 * 299.50198 * 1 2 3 20 20 H 1.08994 * 109.47200 * 59.50790 * 1 2 3 21 21 H 1.09007 * 109.46648 * 179.51083 * 1 2 3 22 22 H 1.09005 * 108.89564 * 281.05037 * 4 2 1 23 23 H 1.08994 * 108.89784 * 39.64079 * 4 2 1 24 24 H 1.08994 * 108.89634 * 182.68582 * 5 4 2 25 25 H 1.08997 * 108.89801 * 301.27753 * 5 4 2 26 26 H 1.09000 * 109.60807 * 160.24962 * 6 5 4 27 27 H 1.08993 * 109.72401 * 39.62555 * 6 5 4 28 28 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 29 29 H 1.09001 * 108.81051 * 79.09384 * 17 7 6 30 30 H 1.09000 * 108.81464 * 197.37566 * 17 7 6 31 31 H 1.08994 * 108.88019 * 93.08553 * 18 2 1 32 32 H 1.09000 * 108.79363 * 334.57949 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0481 -0.7369 -1.2521 5 6 3.4276 -0.3953 -1.5658 6 6 4.4023 -0.7960 -0.4379 7 6 4.3396 0.2516 0.6405 8 1 4.0340 1.1984 0.1951 9 6 5.7120 0.4164 1.2407 10 1 5.8627 0.2518 2.2974 11 6 6.7755 0.7774 0.4407 12 7 6.5921 0.9774 -0.8461 13 14 8.4765 0.9824 1.1849 14 1 9.4383 1.3707 0.1220 15 1 8.4368 2.0392 2.2273 16 1 8.9070 -0.3004 1.7966 17 6 3.3469 -0.1160 1.7599 18 6 2.0355 -0.7192 1.2212 19 1 -0.3633 0.5061 0.8944 20 1 -0.3633 0.5214 -0.8855 21 1 -0.3633 -1.0277 -0.0088 22 1 1.9804 -1.8116 -1.0824 23 1 1.4187 -0.4739 -2.1022 24 1 3.7185 -0.9080 -2.4826 25 1 3.4970 0.6806 -1.7263 26 1 5.4162 -0.8535 -0.8338 27 1 4.1116 -1.7626 -0.0266 28 1 7.3402 1.2318 -1.4088 29 1 3.8192 -0.8390 2.4250 30 1 3.1122 0.7824 2.3307 31 1 2.2063 -1.7657 0.9688 32 1 1.2757 -0.6643 2.0008 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260374951.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:09 Heat of formation + Delta-G solvation = -49.966769 kcal Electronic energy + Delta-G solvation = -11654.707928 eV Core-core repulsion = 9806.155341 eV Total energy + Delta-G solvation = -1848.552587 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.87009 -35.65763 -33.26793 -32.95132 -28.72779 -26.78330 -24.66700 -23.45793 -21.08384 -19.79081 -18.28666 -16.72548 -15.68604 -15.61520 -15.19956 -14.84688 -14.11861 -13.87821 -13.55048 -13.19485 -12.88739 -12.71515 -12.52554 -12.40717 -12.09213 -11.99995 -11.30918 -11.11252 -11.07556 -10.93694 -10.80194 -10.47017 -10.22268 -8.04287 -6.18525 1.40449 1.41483 1.49038 2.44543 3.21352 3.87864 4.03369 4.19642 4.48452 4.60873 4.64216 4.74096 4.80690 4.85783 4.97183 5.02503 5.14332 5.22556 5.29477 5.37751 5.38786 5.51430 5.57618 5.63019 5.69461 5.78306 5.84278 6.09623 6.29470 6.49540 6.97308 7.48279 8.98633 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.069618 B = 0.011978 C = 0.010835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.099496 B = 2336.994698 C = 2583.569434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 H 0.046 0.954 4 C -0.101 4.101 5 C -0.102 4.102 6 C -0.087 4.087 7 C 0.047 3.953 8 H -0.010 1.010 9 C -0.540 4.540 10 H 0.046 0.954 11 C 0.011 3.989 12 N -0.910 5.910 13 Si 0.949 3.051 14 H -0.284 1.284 15 H -0.274 1.274 16 H -0.272 1.272 17 C -0.103 4.103 18 C -0.104 4.104 19 H 0.058 0.942 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.033 0.967 28 H 0.258 0.742 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.066 -3.225 0.646 9.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 H 0.065 0.935 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.125 4.125 7 C 0.029 3.971 8 H 0.008 0.992 9 C -0.578 4.578 10 H 0.064 0.936 11 C -0.188 4.188 12 N -0.549 5.549 13 Si 0.775 3.225 14 H -0.209 1.209 15 H -0.199 1.199 16 H -0.198 1.198 17 C -0.141 4.141 18 C -0.141 4.141 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.972 -3.175 0.487 9.530 hybrid contribution 1.404 0.405 0.223 1.478 sum -7.569 -2.771 0.710 8.091 Atomic orbital electron populations 1.21819 0.93296 1.02259 1.01854 1.20874 0.96310 0.98885 0.94853 0.93499 1.20501 0.95396 1.00126 0.97763 1.20310 0.96035 0.99571 0.98072 1.21157 0.98584 0.96913 0.95852 1.18444 0.92379 0.93692 0.92579 0.99201 1.21762 0.95250 1.46365 0.94437 0.93592 1.25705 1.02331 0.95404 0.95329 1.70100 1.32004 1.47730 1.05098 0.85760 0.80084 0.78602 0.78081 1.20911 1.19932 1.19756 1.21934 0.95349 0.98724 0.98105 1.21373 0.95956 0.99390 0.97379 0.92298 0.92339 0.91714 0.91977 0.91757 0.94048 0.95182 0.93334 0.94819 0.93282 0.94124 0.94564 0.92515 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.87 71.98 0.64 -2.64 16 2 C -0.09 -2.95 2.40 -11.19 -0.03 -2.98 16 3 H 0.05 1.78 6.97 -2.39 -0.02 1.76 16 4 C -0.10 -3.35 4.68 28.74 0.13 -3.22 16 5 C -0.10 -4.31 5.27 28.78 0.15 -4.15 16 6 C -0.09 -4.25 4.70 30.24 0.14 -4.11 16 7 C 0.05 2.44 1.64 -12.00 -0.02 2.42 16 8 H -0.01 -0.58 6.62 -2.38 -0.02 -0.60 16 9 C -0.54 -30.85 8.41 25.60 0.22 -30.63 16 10 H 0.05 2.59 7.68 -2.91 -0.02 2.57 16 11 C 0.01 0.62 5.02 84.66 0.42 1.04 16 12 N -0.91 -53.67 11.48 21.45 0.25 -53.42 16 13 Si 0.95 44.75 29.54 68.60 2.03 46.78 16 14 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 15 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 C -0.10 -4.41 5.17 31.32 0.16 -4.25 16 18 C -0.10 -3.50 4.89 30.14 0.15 -3.36 16 19 H 0.06 1.32 8.09 -2.39 -0.02 1.30 16 20 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 22 H 0.06 1.92 7.47 -2.38 -0.02 1.91 16 23 H 0.06 1.87 7.97 -2.39 -0.02 1.85 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.03 1.40 7.46 -2.39 -0.02 1.38 16 26 H 0.05 2.72 5.77 -2.39 -0.01 2.70 16 27 H 0.03 1.52 6.97 -2.39 -0.02 1.50 16 28 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.04 1.73 7.93 -2.39 -0.02 1.72 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.87 6.63 -2.39 -0.02 1.86 16 32 H 0.07 1.96 7.67 -2.39 -0.02 1.94 16 Total: -1.00 -60.42 241.50 5.30 -55.12 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 1.06 Total: 3.40 kcal Atomic # 6 Polarization: -53.84 SS G_CDS: 1.97 Total: -51.87 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.25 Total: -53.42 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -60.42 5.30 -55.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374951.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.149 kcal (2) G-P(sol) polarization free energy of solvation -60.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds