Wall clock time and date at job start Mon Mar 30 2020 01:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46952 * 2 1 4 4 C 1.53006 * 109.47095 * 240.00496 * 2 1 3 5 5 C 1.52997 * 109.47643 * 120.00251 * 2 1 3 6 6 C 1.53782 * 113.61411 * 63.54442 * 5 2 1 7 7 C 1.53776 * 87.17361 * 140.02567 * 6 5 2 8 8 C 1.50698 * 113.61226 * 89.07337 * 7 6 5 9 9 H 1.08006 * 120.00096 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00071 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99810 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99962 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46694 * 90.00571 * 12 10 8 14 14 H 1.48499 * 109.46967 * 209.99996 * 12 10 8 15 15 H 1.48495 * 109.47218 * 330.00259 * 12 10 8 16 16 C 1.53779 * 87.08218 * 334.52801 * 7 6 5 17 17 H 1.09002 * 109.46842 * 299.99781 * 1 2 3 18 18 H 1.08993 * 109.47130 * 59.99817 * 1 2 3 19 19 H 1.09001 * 109.46973 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.46932 * 180.02562 * 3 2 1 21 21 H 1.08998 * 109.46938 * 299.99858 * 3 2 1 22 22 H 1.08994 * 109.47001 * 60.00153 * 3 2 1 23 23 H 1.09004 * 109.46549 * 293.51294 * 4 2 1 24 24 H 1.09000 * 109.46987 * 53.51023 * 4 2 1 25 25 H 1.09002 * 109.47099 * 173.51364 * 4 2 1 26 26 H 1.09001 * 112.90412 * 292.29822 * 5 2 1 27 27 H 1.09005 * 113.61349 * 25.43564 * 6 5 2 28 28 H 1.09004 * 113.61695 * 254.61914 * 6 5 2 29 29 H 1.08993 * 113.61376 * 219.97651 * 7 6 5 30 30 H 0.97000 * 119.99686 * 179.97438 * 11 10 8 31 31 H 1.09004 * 113.61603 * 139.97825 * 16 7 6 32 32 H 1.08999 * 113.61472 * 270.79673 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2491 6 6 1.6537 -2.2088 1.3025 7 6 3.0632 -2.4767 1.8559 8 6 3.1483 -2.3910 3.3581 9 1 2.2661 -2.1597 3.9366 10 6 4.3521 -2.6091 3.9940 11 7 5.4262 -2.8913 3.2895 12 14 4.4576 -2.5022 5.8560 13 1 4.1882 -3.8387 6.4445 14 1 5.8172 -2.0529 6.2497 15 1 3.4515 -1.5301 6.3539 16 6 3.5038 -1.1892 1.1397 17 1 -0.3633 0.5138 0.8900 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0277 -0.0005 20 1 3.1300 1.4425 -0.0005 21 1 1.6766 1.9563 -0.8900 22 1 1.6767 1.9563 0.8900 23 1 1.7745 -1.7769 -1.1932 24 1 1.5850 -0.2787 -2.1355 25 1 3.1238 -0.6217 -1.3093 26 1 1.8224 -0.1803 2.1700 27 1 1.4788 -2.6500 0.3212 28 1 0.8567 -2.4277 2.0132 29 1 3.5252 -3.3790 1.4556 30 1 6.2731 -3.0443 3.7369 31 1 4.2004 -0.5835 1.7193 32 1 3.8360 -1.3518 0.1144 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260400305.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:24 Heat of formation + Delta-G solvation = -7.312529 kcal Electronic energy + Delta-G solvation = -11498.538471 eV Core-core repulsion = 9651.835510 eV Total energy + Delta-G solvation = -1846.702961 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.89234 -34.50111 -31.88171 -27.07655 -26.91958 -25.92714 -24.00993 -23.00422 -19.03938 -17.54235 -15.76723 -14.92829 -14.43018 -14.03344 -13.67774 -13.17941 -12.19303 -12.06069 -11.98573 -11.62180 -11.41328 -11.02755 -10.99666 -10.74745 -10.60017 -10.49463 -10.14181 -9.82233 -9.66360 -8.91746 -8.72931 -8.54765 -8.18716 -5.96108 -3.98196 3.33150 3.39686 3.43014 4.47655 5.30249 5.32575 5.36137 5.37007 5.89876 5.97045 6.04484 6.12937 6.16394 6.19053 6.23747 6.30698 6.35979 6.50012 6.70858 6.72252 6.76741 6.84673 6.94338 7.08128 7.40291 7.57174 7.67050 7.93484 8.04593 8.57902 9.06449 9.65290 11.14433 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.063767 B = 0.010898 C = 0.010675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.994312 B = 2568.728681 C = 2622.383654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 C -0.135 4.135 4 C -0.141 4.141 5 C -0.090 4.090 6 C -0.144 4.144 7 C 0.044 3.956 8 C -0.500 4.500 9 H 0.055 0.945 10 C 0.063 3.937 11 N -0.889 5.889 12 Si 0.888 3.112 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.130 4.130 17 H 0.049 0.951 18 H 0.042 0.958 19 H 0.053 0.947 20 H 0.054 0.946 21 H 0.043 0.957 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.031 0.969 30 H 0.259 0.741 31 H 0.052 0.948 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 5.181 -5.856 9.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.064 4.064 3 C -0.193 4.193 4 C -0.198 4.198 5 C -0.108 4.108 6 C -0.181 4.181 7 C 0.025 3.975 8 C -0.539 4.539 9 H 0.073 0.927 10 C -0.139 4.139 11 N -0.527 5.527 12 Si 0.716 3.284 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.168 4.168 17 H 0.068 0.932 18 H 0.061 0.939 19 H 0.072 0.928 20 H 0.073 0.927 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.996 5.144 -5.834 9.820 hybrid contribution 0.186 0.099 1.057 1.078 sum -5.810 5.243 -4.776 9.168 Atomic orbital electron populations 1.21801 0.95641 1.01377 1.00415 1.20509 0.94581 0.95010 0.96259 1.21801 1.01177 0.95894 1.00405 1.21975 1.01117 1.00531 0.96152 1.22446 0.98250 0.94833 0.95255 1.23155 1.00281 0.95854 0.98827 1.19699 0.89639 0.93589 0.94571 1.20912 0.94615 1.47475 0.90848 0.92698 1.24995 0.95927 0.95084 0.97896 1.69984 0.99739 1.47925 1.35077 0.86658 0.77253 0.78293 0.86170 1.20709 1.21287 1.19920 1.23131 0.93895 1.01371 0.98434 0.93202 0.93850 0.92757 0.92669 0.93837 0.93180 0.92348 0.94071 0.92329 0.90359 0.92506 0.93498 0.95053 0.93143 0.92892 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.31 37.16 0.31 -1.65 16 2 C -0.06 -1.03 0.68 -154.50 -0.11 -1.14 16 3 C -0.14 -2.03 8.43 37.16 0.31 -1.72 16 4 C -0.14 -2.18 7.48 37.16 0.28 -1.90 16 5 C -0.09 -1.80 2.77 -89.67 -0.25 -2.05 16 6 C -0.14 -3.07 6.22 -25.92 -0.16 -3.23 16 7 C 0.04 1.12 3.62 -90.96 -0.33 0.79 16 8 C -0.50 -14.09 8.46 -34.44 -0.29 -14.38 16 9 H 0.05 1.53 7.81 -52.48 -0.41 1.12 16 10 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -26.41 13.28 55.43 0.74 -25.67 16 12 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 C -0.13 -3.02 6.89 -25.78 -0.18 -3.19 16 17 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 18 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 19 H 0.05 0.79 7.56 -51.93 -0.39 0.40 16 20 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.93 6.06 -51.93 -0.31 0.62 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 26 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 27 H 0.06 1.11 6.10 -51.93 -0.32 0.79 16 28 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 29 H 0.03 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.05 1.35 8.09 -51.93 -0.42 0.93 16 32 H 0.05 1.13 5.71 -51.93 -0.30 0.84 16 LS Contribution 251.76 15.07 3.79 3.79 Total: -1.00 -28.70 251.76 -6.42 -35.12 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.42 Total: -3.14 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -0.51 Total: -26.78 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.70 -6.42 -35.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400305.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.807 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds