Wall clock time and date at job start Mon Mar 30 2020 01:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46952 * 2 1 4 4 C 1.53006 * 109.47095 * 240.00496 * 2 1 3 5 5 C 1.52997 * 109.47643 * 120.00251 * 2 1 3 6 6 C 1.53782 * 113.61411 * 63.54442 * 5 2 1 7 7 C 1.53776 * 87.17361 * 140.02567 * 6 5 2 8 8 C 1.50698 * 113.61226 * 89.07337 * 7 6 5 9 9 H 1.08006 * 120.00096 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00071 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99810 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99962 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46694 * 90.00571 * 12 10 8 14 14 H 1.48499 * 109.46967 * 209.99996 * 12 10 8 15 15 H 1.48495 * 109.47218 * 330.00259 * 12 10 8 16 16 C 1.53779 * 87.08218 * 334.52801 * 7 6 5 17 17 H 1.09002 * 109.46842 * 299.99781 * 1 2 3 18 18 H 1.08993 * 109.47130 * 59.99817 * 1 2 3 19 19 H 1.09001 * 109.46973 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.46932 * 180.02562 * 3 2 1 21 21 H 1.08998 * 109.46938 * 299.99858 * 3 2 1 22 22 H 1.08994 * 109.47001 * 60.00153 * 3 2 1 23 23 H 1.09004 * 109.46549 * 293.51294 * 4 2 1 24 24 H 1.09000 * 109.46987 * 53.51023 * 4 2 1 25 25 H 1.09002 * 109.47099 * 173.51364 * 4 2 1 26 26 H 1.09001 * 112.90412 * 292.29822 * 5 2 1 27 27 H 1.09005 * 113.61349 * 25.43564 * 6 5 2 28 28 H 1.09004 * 113.61695 * 254.61914 * 6 5 2 29 29 H 1.08993 * 113.61376 * 219.97651 * 7 6 5 30 30 H 0.97000 * 119.99686 * 179.97438 * 11 10 8 31 31 H 1.09004 * 113.61603 * 139.97825 * 16 7 6 32 32 H 1.08999 * 113.61472 * 270.79673 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2491 6 6 1.6537 -2.2088 1.3025 7 6 3.0632 -2.4767 1.8559 8 6 3.1483 -2.3910 3.3581 9 1 2.2661 -2.1597 3.9366 10 6 4.3521 -2.6091 3.9940 11 7 5.4262 -2.8913 3.2895 12 14 4.4576 -2.5022 5.8560 13 1 4.1882 -3.8387 6.4445 14 1 5.8172 -2.0529 6.2497 15 1 3.4515 -1.5301 6.3539 16 6 3.5038 -1.1892 1.1397 17 1 -0.3633 0.5138 0.8900 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0277 -0.0005 20 1 3.1300 1.4425 -0.0005 21 1 1.6766 1.9563 -0.8900 22 1 1.6767 1.9563 0.8900 23 1 1.7745 -1.7769 -1.1932 24 1 1.5850 -0.2787 -2.1355 25 1 3.1238 -0.6217 -1.3093 26 1 1.8224 -0.1803 2.1700 27 1 1.4788 -2.6500 0.3212 28 1 0.8567 -2.4277 2.0132 29 1 3.5252 -3.3790 1.4556 30 1 6.2731 -3.0443 3.7369 31 1 4.2004 -0.5835 1.7193 32 1 3.8360 -1.3518 0.1144 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400305.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:23 Heat of formation + Delta-G solvation = -22.633092 kcal Electronic energy + Delta-G solvation = -11499.202820 eV Core-core repulsion = 9651.835510 eV Total energy + Delta-G solvation = -1847.367310 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.53680 -36.11463 -33.96082 -28.32703 -28.23696 -27.86818 -25.77170 -24.82391 -20.79303 -19.22534 -17.80680 -16.61753 -16.29192 -15.64917 -14.98519 -14.72520 -13.95809 -13.62384 -13.49090 -13.19703 -12.83978 -12.78545 -12.53687 -12.39086 -12.29898 -12.00114 -11.71011 -11.40767 -11.39699 -10.80845 -10.69440 -10.45711 -10.15726 -8.14750 -6.23716 1.38981 1.39494 1.50260 2.41432 3.15841 3.92777 3.98891 4.05661 4.44702 4.47192 4.52590 4.76070 4.77930 4.89740 4.93227 4.95991 5.09188 5.09703 5.19304 5.21700 5.32222 5.39209 5.47275 5.54139 5.57107 5.69554 5.75692 5.83581 6.06172 6.44430 6.89194 7.43386 8.96182 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.063767 B = 0.010898 C = 0.010675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.994312 B = 2568.728681 C = 2622.383654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.062 4.062 3 C -0.134 4.134 4 C -0.140 4.140 5 C -0.072 4.072 6 C -0.128 4.128 7 C 0.018 3.982 8 C -0.517 4.517 9 H 0.053 0.947 10 C 0.008 3.992 11 N -0.924 5.924 12 Si 0.956 3.044 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.266 1.266 16 C -0.123 4.123 17 H 0.050 0.950 18 H 0.068 0.932 19 H 0.051 0.949 20 H 0.041 0.959 21 H 0.070 0.930 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.045 0.955 29 H -0.005 1.005 30 H 0.260 0.740 31 H 0.019 0.981 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.614 6.177 -6.291 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.062 4.062 3 C -0.192 4.192 4 C -0.197 4.197 5 C -0.091 4.091 6 C -0.165 4.165 7 C 0.000 4.000 8 C -0.555 4.555 9 H 0.071 0.929 10 C -0.190 4.190 11 N -0.564 5.564 12 Si 0.781 3.219 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.191 1.191 16 C -0.161 4.161 17 H 0.069 0.931 18 H 0.087 0.913 19 H 0.070 0.930 20 H 0.060 0.940 21 H 0.089 0.911 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.014 0.986 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.433 6.142 -6.271 11.502 hybrid contribution 0.643 -0.242 1.159 1.347 sum -6.790 5.899 -5.113 10.346 Atomic orbital electron populations 1.21769 0.93682 1.01696 1.01776 1.20496 0.96116 0.95336 0.94231 1.21788 1.00384 0.95171 1.01813 1.21959 1.00594 1.00253 0.96873 1.22248 0.95462 0.94464 0.96878 1.23028 0.97294 0.96726 0.99445 1.19806 0.93058 0.93162 0.94005 1.21246 0.94667 1.47270 0.92287 0.92888 1.25836 0.95560 0.94787 1.02817 1.70111 1.00248 1.48987 1.37032 0.85591 0.77420 0.78625 0.80267 1.19911 1.20864 1.19056 1.23010 0.95423 0.99595 0.98113 0.93129 0.91280 0.92997 0.93980 0.91133 0.93108 0.93012 0.91206 0.93462 0.91956 0.90390 0.93624 0.98642 0.93085 0.96186 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.31 71.98 0.60 -2.76 16 2 C -0.06 -1.86 0.68 -52.18 -0.04 -1.89 16 3 C -0.13 -3.68 8.43 71.98 0.61 -3.07 16 4 C -0.14 -3.95 7.48 71.98 0.54 -3.42 16 5 C -0.07 -2.85 2.77 -10.18 -0.03 -2.88 16 6 C -0.13 -5.38 6.22 31.12 0.19 -5.18 16 7 C 0.02 0.96 3.62 -11.02 -0.04 0.92 16 8 C -0.52 -29.68 8.46 25.60 0.22 -29.46 16 9 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 10 C 0.01 0.48 5.46 84.65 0.46 0.94 16 11 N -0.92 -56.35 13.28 21.45 0.28 -56.06 16 12 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 16 C -0.12 -5.82 6.89 31.21 0.22 -5.61 16 17 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 18 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 19 H 0.05 1.35 7.56 -2.39 -0.02 1.33 16 20 H 0.04 1.24 8.12 -2.38 -0.02 1.22 16 21 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.05 1.52 6.06 -2.38 -0.01 1.51 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.43 6.47 -2.39 -0.02 1.41 16 26 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.08 2.94 6.10 -2.38 -0.01 2.92 16 28 H 0.04 1.91 8.09 -2.38 -0.02 1.89 16 29 H 0.00 -0.28 8.13 -2.39 -0.02 -0.30 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.02 1.03 8.09 -2.38 -0.02 1.01 16 32 H 0.06 2.85 5.71 -2.39 -0.01 2.84 16 Total: -1.00 -62.23 251.76 6.10 -56.13 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.06 Total: 5.35 kcal Atomic # 6 Polarization: -55.13 SS G_CDS: 2.73 Total: -52.40 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.28 Total: -56.06 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -62.23 6.10 -56.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400305.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.496 kcal (2) G-P(sol) polarization free energy of solvation -62.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds