Wall clock time and date at job start Mon Mar 30 2020 01:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47375 * 2 1 4 4 C 1.53005 * 109.46513 * 240.00367 * 2 1 3 5 5 C 1.53004 * 109.47338 * 120.00563 * 2 1 3 6 6 C 1.52995 * 115.54795 * 275.17311 * 5 2 1 7 7 C 1.52993 * 117.51812 * 129.47327 * 5 2 1 8 8 C 1.52995 * 60.00206 * 252.52139 * 7 5 2 9 9 H 1.09006 * 117.51885 * 252.52241 * 8 7 5 10 10 C 1.50700 * 117.50324 * 107.49238 * 8 7 5 11 11 H 1.08001 * 119.99535 * 288.12870 * 10 8 7 12 12 C 1.37870 * 120.00127 * 108.12943 * 10 8 7 13 13 N 1.31521 * 120.00037 * 0.27646 * 12 10 8 14 14 Si 1.86797 * 120.00233 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47077 * 89.99849 * 14 12 10 16 16 H 1.48502 * 109.47391 * 209.99908 * 14 12 10 17 17 H 1.48507 * 109.46944 * 330.00072 * 14 12 10 18 18 H 1.09001 * 109.46745 * 308.62573 * 1 2 3 19 19 H 1.08995 * 109.47262 * 68.62532 * 1 2 3 20 20 H 1.09002 * 109.47248 * 188.62968 * 1 2 3 21 21 H 1.08999 * 109.46918 * 180.02562 * 3 2 1 22 22 H 1.08998 * 109.46983 * 300.00536 * 3 2 1 23 23 H 1.08993 * 109.46778 * 60.00562 * 3 2 1 24 24 H 1.09003 * 109.47027 * 291.77193 * 4 2 1 25 25 H 1.08994 * 109.47521 * 51.77191 * 4 2 1 26 26 H 1.09008 * 109.46729 * 171.77580 * 4 2 1 27 27 H 1.08995 * 109.47253 * 205.67140 * 6 5 2 28 28 H 1.09003 * 109.47456 * 325.67207 * 6 5 2 29 29 H 1.09001 * 109.47250 * 85.66635 * 6 5 2 30 30 H 1.09000 * 117.49967 * 145.02838 * 7 5 2 31 31 H 1.09007 * 117.50483 * 0.02562 * 7 5 2 32 32 H 0.96998 * 119.99943 * 359.71894 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0398 -0.7212 -1.2494 5 6 2.0400 -0.7214 1.2492 6 6 2.1427 0.1373 2.5113 7 6 3.0889 -1.8179 1.0535 8 6 1.6522 -2.1910 1.4241 9 1 1.4697 -2.5461 2.4384 10 6 0.7975 -2.8175 0.3526 11 1 0.4387 -2.2180 -0.4711 12 6 0.4735 -4.1557 0.4238 13 7 0.9058 -4.8843 1.4298 14 14 -0.5854 -4.9323 -0.9047 15 1 0.2848 -5.4557 -1.9883 16 1 -1.3735 -6.0473 -0.3207 17 1 -1.5092 -3.9114 -1.4612 18 1 -0.3633 0.6415 0.8029 19 1 -0.3633 0.3745 -0.9569 20 1 -0.3634 -1.0160 0.1542 21 1 3.1300 1.4424 -0.0005 22 1 1.6766 1.9563 -0.8899 23 1 1.6768 1.9562 0.8900 24 1 1.8015 -1.7825 -1.1789 25 1 1.5614 -0.2993 -2.1332 26 1 3.1200 -0.5957 -1.3260 27 1 2.8976 -0.2826 3.1760 28 1 2.4248 1.1539 2.2373 29 1 1.1787 0.1525 3.0198 30 1 3.8521 -1.9275 1.8240 31 1 3.4162 -2.0253 0.0347 32 1 1.4561 -4.4811 2.1194 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260418118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:32 Heat of formation + Delta-G solvation = 10.314786 kcal Electronic energy + Delta-G solvation = -11819.098223 eV Core-core repulsion = 9973.159640 eV Total energy + Delta-G solvation = -1845.938583 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.79430 -33.47125 -32.04679 -28.78756 -26.64470 -25.57819 -24.50849 -21.13465 -20.48826 -17.13950 -16.54511 -14.45424 -14.24401 -13.71004 -13.41864 -12.74106 -12.65879 -11.92876 -11.86501 -11.52832 -11.20699 -11.12625 -10.87276 -10.69267 -10.52280 -10.13940 -10.08527 -9.83745 -9.59460 -9.15180 -8.37497 -8.17605 -8.05455 -6.33783 -4.00617 3.42799 3.45244 3.60503 4.51011 4.98821 5.43561 5.51806 5.61335 5.81711 5.98952 6.14323 6.22057 6.23543 6.35759 6.40084 6.48554 6.53900 6.59465 6.69379 6.75110 6.76985 6.93287 7.01875 7.05327 7.31297 7.37895 7.46301 7.55838 8.31887 8.45486 8.87514 9.66939 11.02389 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.047168 B = 0.015466 C = 0.013382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.476985 B = 1810.007740 C = 2091.909946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.010 4.010 3 C -0.139 4.139 4 C -0.163 4.163 5 C -0.144 4.144 6 C -0.111 4.111 7 C -0.212 4.212 8 C 0.020 3.980 9 H 0.056 0.944 10 C -0.575 4.575 11 H 0.081 0.919 12 C 0.021 3.979 13 N -0.908 5.908 14 Si 1.065 2.935 15 H -0.288 1.288 16 H -0.285 1.285 17 H -0.286 1.286 18 H 0.035 0.965 19 H 0.033 0.967 20 H 0.101 0.899 21 H 0.046 0.954 22 H 0.041 0.959 23 H 0.050 0.950 24 H 0.106 0.894 25 H 0.032 0.968 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.680 8.056 -2.379 8.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.010 4.010 3 C -0.197 4.197 4 C -0.219 4.219 5 C -0.144 4.144 6 C -0.168 4.168 7 C -0.249 4.249 8 C 0.002 3.998 9 H 0.074 0.926 10 C -0.611 4.611 11 H 0.098 0.902 12 C -0.184 4.184 13 N -0.542 5.542 14 Si 0.893 3.107 15 H -0.214 1.214 16 H -0.210 1.210 17 H -0.212 1.212 18 H 0.054 0.946 19 H 0.052 0.948 20 H 0.119 0.881 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.124 0.876 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.031 6.623 -2.847 7.209 hybrid contribution 0.971 1.597 0.562 1.951 sum 0.940 8.220 -2.284 8.583 Atomic orbital electron populations 1.22237 0.95227 1.04972 0.98825 1.19618 0.95018 0.92598 0.93804 1.21988 1.00219 0.97229 1.00216 1.22454 0.98953 1.05141 0.95367 1.21354 1.06712 0.91635 0.94702 1.21370 1.00282 0.98903 0.96286 1.23397 0.94853 1.05934 1.00757 1.20011 0.92031 0.90367 0.97428 0.92607 1.21880 1.33238 0.96544 1.09482 0.90155 1.25840 0.97705 0.94483 1.00408 1.70723 1.33411 1.39171 1.10940 0.83601 0.76152 0.75878 0.75052 1.21427 1.21028 1.21238 0.94572 0.94782 0.88093 0.93528 0.93947 0.93100 0.87587 0.94852 0.94344 0.93881 0.92968 0.93483 0.92483 0.89790 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 8.08 37.16 0.30 -2.74 16 2 C -0.01 -0.20 0.68 -154.51 -0.10 -0.31 16 3 C -0.14 -2.30 7.50 37.16 0.28 -2.02 16 4 C -0.16 -3.20 6.73 37.16 0.25 -2.95 16 5 C -0.14 -3.02 1.89 -154.51 -0.29 -3.31 16 6 C -0.11 -2.05 9.51 37.15 0.35 -1.70 16 7 C -0.21 -4.80 9.06 -26.74 -0.24 -5.04 16 8 C 0.02 0.50 4.78 -91.77 -0.44 0.06 16 9 H 0.06 1.49 7.21 -51.93 -0.37 1.12 16 10 C -0.57 -15.12 5.89 -34.44 -0.20 -15.33 16 11 H 0.08 2.04 3.53 -52.49 -0.19 1.85 16 12 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 13 N -0.91 -26.94 13.65 55.43 0.76 -26.18 16 14 Si 1.06 24.47 29.90 -169.99 -5.08 19.39 16 15 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 18 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 19 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 20 H 0.10 2.25 4.66 -51.93 -0.24 2.01 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.79 6.43 -51.93 -0.33 0.46 16 24 H 0.11 2.38 4.06 -51.93 -0.21 2.17 16 25 H 0.03 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.04 0.72 7.48 -51.92 -0.39 0.33 16 27 H 0.04 0.77 7.90 -51.93 -0.41 0.36 16 28 H 0.05 0.85 5.58 -51.93 -0.29 0.56 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.23 8.05 -51.93 -0.42 0.82 16 31 H 0.08 1.93 5.92 -51.92 -0.31 1.62 16 32 H 0.27 8.09 6.86 -40.82 -0.28 7.81 16 LS Contribution 240.82 15.07 3.63 3.63 Total: -1.00 -27.73 240.82 -5.66 -33.39 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.76 Total: 2.62 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: -0.20 Total: -32.85 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.76 Total: -26.18 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.08 Total: 19.39 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.73 -5.66 -33.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.702 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds