Wall clock time and date at job start Mon Mar 30 2020 01:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47375 * 2 1 4 4 C 1.53005 * 109.46513 * 240.00367 * 2 1 3 5 5 C 1.53004 * 109.47338 * 120.00563 * 2 1 3 6 6 C 1.52995 * 115.54795 * 275.17311 * 5 2 1 7 7 C 1.52993 * 117.51812 * 129.47327 * 5 2 1 8 8 C 1.52995 * 60.00206 * 252.52139 * 7 5 2 9 9 H 1.09006 * 117.51885 * 252.52241 * 8 7 5 10 10 C 1.50700 * 117.50324 * 107.49238 * 8 7 5 11 11 H 1.08001 * 119.99535 * 288.12870 * 10 8 7 12 12 C 1.37870 * 120.00127 * 108.12943 * 10 8 7 13 13 N 1.31521 * 120.00037 * 0.27646 * 12 10 8 14 14 Si 1.86797 * 120.00233 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47077 * 89.99849 * 14 12 10 16 16 H 1.48502 * 109.47391 * 209.99908 * 14 12 10 17 17 H 1.48507 * 109.46944 * 330.00072 * 14 12 10 18 18 H 1.09001 * 109.46745 * 308.62573 * 1 2 3 19 19 H 1.08995 * 109.47262 * 68.62532 * 1 2 3 20 20 H 1.09002 * 109.47248 * 188.62968 * 1 2 3 21 21 H 1.08999 * 109.46918 * 180.02562 * 3 2 1 22 22 H 1.08998 * 109.46983 * 300.00536 * 3 2 1 23 23 H 1.08993 * 109.46778 * 60.00562 * 3 2 1 24 24 H 1.09003 * 109.47027 * 291.77193 * 4 2 1 25 25 H 1.08994 * 109.47521 * 51.77191 * 4 2 1 26 26 H 1.09008 * 109.46729 * 171.77580 * 4 2 1 27 27 H 1.08995 * 109.47253 * 205.67140 * 6 5 2 28 28 H 1.09003 * 109.47456 * 325.67207 * 6 5 2 29 29 H 1.09001 * 109.47250 * 85.66635 * 6 5 2 30 30 H 1.09000 * 117.49967 * 145.02838 * 7 5 2 31 31 H 1.09007 * 117.50483 * 0.02562 * 7 5 2 32 32 H 0.96998 * 119.99943 * 359.71894 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0398 -0.7212 -1.2494 5 6 2.0400 -0.7214 1.2492 6 6 2.1427 0.1373 2.5113 7 6 3.0889 -1.8179 1.0535 8 6 1.6522 -2.1910 1.4241 9 1 1.4697 -2.5461 2.4384 10 6 0.7975 -2.8175 0.3526 11 1 0.4387 -2.2180 -0.4711 12 6 0.4735 -4.1557 0.4238 13 7 0.9058 -4.8843 1.4298 14 14 -0.5854 -4.9323 -0.9047 15 1 0.2848 -5.4557 -1.9883 16 1 -1.3735 -6.0473 -0.3207 17 1 -1.5092 -3.9114 -1.4612 18 1 -0.3633 0.6415 0.8029 19 1 -0.3633 0.3745 -0.9569 20 1 -0.3634 -1.0160 0.1542 21 1 3.1300 1.4424 -0.0005 22 1 1.6766 1.9563 -0.8899 23 1 1.6768 1.9562 0.8900 24 1 1.8015 -1.7825 -1.1789 25 1 1.5614 -0.2993 -2.1332 26 1 3.1200 -0.5957 -1.3260 27 1 2.8976 -0.2826 3.1760 28 1 2.4248 1.1539 2.2373 29 1 1.1787 0.1525 3.0198 30 1 3.8521 -1.9275 1.8240 31 1 3.4162 -2.0253 0.0347 32 1 1.4561 -4.4811 2.1194 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260418118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:32 Heat of formation + Delta-G solvation = -4.424183 kcal Electronic energy + Delta-G solvation = -11819.737353 eV Core-core repulsion = 9973.159640 eV Total energy + Delta-G solvation = -1846.577713 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.49323 -35.26712 -33.92953 -30.39847 -28.20972 -27.05682 -26.47907 -22.79357 -22.40977 -19.04912 -18.22838 -16.27345 -15.91537 -15.52494 -14.91822 -14.45721 -14.12268 -13.74868 -13.39765 -13.16721 -12.84569 -12.77053 -12.45981 -12.25087 -12.20824 -11.92373 -11.66468 -11.58322 -11.16236 -10.98492 -10.38304 -10.05932 -9.89956 -8.49252 -6.13957 1.55666 1.63355 1.79543 2.61426 3.07726 3.50494 3.96081 4.10069 4.33184 4.39041 4.56107 4.68045 4.70331 4.87894 4.91374 4.98396 5.01346 5.06196 5.09830 5.15448 5.23247 5.26851 5.38883 5.41864 5.53077 5.69340 5.78563 5.95011 6.25547 6.36123 6.73657 7.60132 8.86622 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.047168 B = 0.015466 C = 0.013382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.476985 B = 1810.007740 C = 2091.909946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.018 4.018 3 C -0.133 4.133 4 C -0.160 4.160 5 C -0.117 4.117 6 C -0.112 4.112 7 C -0.209 4.209 8 C -0.020 4.020 9 H 0.024 0.976 10 C -0.563 4.563 11 H 0.092 0.908 12 C -0.038 4.038 13 N -0.946 5.946 14 Si 1.109 2.891 15 H -0.277 1.277 16 H -0.291 1.291 17 H -0.264 1.264 18 H 0.047 0.953 19 H 0.053 0.947 20 H 0.066 0.934 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.581 10.374 -3.634 11.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 C -0.190 4.190 4 C -0.216 4.216 5 C -0.117 4.117 6 C -0.169 4.169 7 C -0.247 4.247 8 C -0.039 4.039 9 H 0.042 0.958 10 C -0.600 4.600 11 H 0.109 0.891 12 C -0.236 4.236 13 N -0.584 5.584 14 Si 0.931 3.069 15 H -0.203 1.203 16 H -0.217 1.217 17 H -0.189 1.189 18 H 0.066 0.934 19 H 0.072 0.928 20 H 0.085 0.915 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.125 8.970 -4.108 9.867 hybrid contribution 1.037 0.955 0.971 1.712 sum 0.913 9.926 -3.137 10.450 Atomic orbital electron populations 1.22145 0.95247 1.03157 1.00427 1.19752 0.95038 0.94521 0.92452 1.21911 1.00583 0.94707 1.01829 1.22351 0.99657 1.03105 0.96527 1.21556 1.03252 0.90125 0.96782 1.21416 1.00584 0.99931 0.94965 1.23334 0.93904 1.06906 1.00570 1.19943 0.93882 0.94434 0.95635 0.95754 1.22229 1.31904 0.96412 1.09471 0.89094 1.27198 0.98865 0.95886 1.01611 1.70856 1.35719 1.39621 1.12216 0.83040 0.75221 0.75521 0.73086 1.20300 1.21662 1.18863 0.93429 0.92770 0.91479 0.92961 0.92072 0.91871 0.90895 0.92858 0.93700 0.93738 0.90004 0.93404 0.91898 0.90232 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 8.08 71.98 0.58 -4.96 16 2 C -0.02 -0.63 0.68 -52.18 -0.04 -0.67 16 3 C -0.13 -3.76 7.50 71.98 0.54 -3.22 16 4 C -0.16 -5.90 6.73 71.98 0.48 -5.41 16 5 C -0.12 -4.74 1.89 -52.18 -0.10 -4.84 16 6 C -0.11 -3.85 9.51 71.98 0.68 -3.17 16 7 C -0.21 -9.45 9.06 30.59 0.28 -9.17 16 8 C -0.02 -1.03 4.78 -11.54 -0.06 -1.09 16 9 H 0.02 1.37 7.21 -2.38 -0.02 1.36 16 10 C -0.56 -30.07 5.89 25.60 0.15 -29.92 16 11 H 0.09 4.59 3.53 -2.91 -0.01 4.58 16 12 C -0.04 -2.16 5.46 84.65 0.46 -1.70 16 13 N -0.95 -58.43 13.65 21.45 0.29 -58.14 16 14 Si 1.11 49.71 29.90 68.60 2.05 51.76 16 15 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 17 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 18 H 0.05 1.58 8.13 -2.39 -0.02 1.57 16 19 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 20 H 0.07 2.91 4.66 -2.39 -0.01 2.90 16 21 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.06 1.64 6.43 -2.39 -0.02 1.62 16 24 H 0.07 3.20 4.06 -2.39 -0.01 3.19 16 25 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 26 H 0.04 1.56 7.48 -2.38 -0.02 1.55 16 27 H 0.04 1.50 7.90 -2.39 -0.02 1.48 16 28 H 0.08 2.34 5.58 -2.39 -0.01 2.33 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 2.72 8.05 -2.39 -0.02 2.70 16 31 H 0.08 3.63 5.92 -2.38 -0.01 3.62 16 32 H 0.25 16.06 6.86 -92.71 -0.64 15.42 16 Total: -1.00 -60.50 240.82 6.56 -53.95 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 1.22 Total: 16.58 kcal Atomic # 6 Polarization: -67.14 SS G_CDS: 2.99 Total: -64.15 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.29 Total: -58.14 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.05 Total: 51.76 kcal Total: -60.50 6.56 -53.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.524 kcal (2) G-P(sol) polarization free energy of solvation -60.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds