Wall clock time and date at job start Mon Mar 30 2020 01:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47161 * 2 1 4 4 C 1.53001 * 109.46888 * 240.00461 * 2 1 3 5 5 C 1.53000 * 109.47304 * 120.00646 * 2 1 3 6 6 C 1.52999 * 115.54733 * 205.67213 * 5 2 1 7 7 C 1.52994 * 117.49792 * 351.37258 * 5 2 1 8 8 C 1.52990 * 117.50085 * 59.99663 * 5 2 1 9 9 H 1.08995 * 117.50354 * 0.02562 * 8 5 2 10 10 C 1.50702 * 117.49806 * 145.02067 * 8 5 2 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 8 5 12 12 C 1.37884 * 119.99942 * 179.72069 * 10 8 5 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 H 1.09000 * 109.47313 * 299.99825 * 1 2 3 19 19 H 1.08999 * 109.47408 * 59.99603 * 1 2 3 20 20 H 1.09004 * 109.47580 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47036 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.47284 * 300.00472 * 3 2 1 23 23 H 1.08998 * 109.46822 * 60.00683 * 3 2 1 24 24 H 1.08998 * 109.47086 * 299.99663 * 4 2 1 25 25 H 1.08999 * 109.47149 * 59.99777 * 4 2 1 26 26 H 1.09005 * 109.47081 * 180.02562 * 4 2 1 27 27 H 1.09004 * 109.47011 * 274.32159 * 6 5 2 28 28 H 1.08997 * 109.47524 * 34.32432 * 6 5 2 29 29 H 1.09000 * 109.47201 * 154.32823 * 6 5 2 30 30 H 1.08999 * 117.50086 * 0.02562 * 7 5 2 31 31 H 1.09007 * 117.49837 * 214.98534 * 7 5 2 32 32 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7214 1.2491 6 6 3.4329 -0.3072 1.7278 7 6 1.0105 -1.1018 2.3150 8 6 1.6357 -2.1853 1.4341 9 1 1.0067 -2.6347 0.6657 10 6 2.6399 -3.1089 2.0742 11 1 3.6025 -2.7292 2.3833 12 6 2.3272 -4.4373 2.2710 13 7 1.1547 -4.8995 1.8950 14 14 3.5689 -5.5804 3.0714 15 1 3.8942 -5.0830 4.4324 16 1 2.9942 -6.9464 3.1674 17 1 4.8057 -5.6208 2.2505 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 3.1300 1.4425 -0.0005 22 1 1.6766 1.9564 -0.8899 23 1 1.6767 1.9562 0.8900 24 1 1.6766 -1.7488 -1.2494 25 1 1.6765 -0.2073 -2.1393 26 1 3.1299 -0.7216 -1.2491 27 1 4.1873 -0.8842 1.1928 28 1 3.5828 0.7549 1.5340 29 1 3.5210 -0.4974 2.7974 30 1 -0.0303 -0.8386 2.1262 31 1 1.3254 -1.0570 3.3576 32 1 0.9349 -5.8342 2.0332 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260418120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:34 Heat of formation + Delta-G solvation = -0.248611 kcal Electronic energy + Delta-G solvation = -11570.805383 eV Core-core repulsion = 9724.408736 eV Total energy + Delta-G solvation = -1846.396646 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.55147 -33.68209 -31.77962 -28.51280 -26.77049 -25.85458 -25.08072 -21.13658 -20.09643 -16.74445 -16.09030 -15.02083 -14.45297 -13.63597 -13.39537 -12.78017 -12.47901 -11.92909 -11.81174 -11.59659 -11.25986 -11.13542 -10.96280 -10.81243 -10.60232 -10.36312 -10.17931 -10.08503 -9.68053 -9.15048 -8.86444 -8.19355 -7.95178 -6.02195 -3.99443 3.32305 3.36953 3.39566 4.43153 5.03828 5.40512 5.44098 5.50085 5.76793 6.07306 6.11330 6.13432 6.22391 6.27082 6.36391 6.46212 6.53947 6.59738 6.66227 6.77484 6.83797 6.89649 6.95852 7.08161 7.18786 7.20660 7.53015 7.73527 7.96846 8.54131 9.01803 9.59624 11.08617 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.057623 B = 0.012180 C = 0.011529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.800306 B = 2298.322111 C = 2427.975852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.026 4.026 3 C -0.136 4.136 4 C -0.133 4.133 5 C -0.155 4.155 6 C -0.098 4.098 7 C -0.210 4.210 8 C 0.046 3.954 9 H 0.074 0.926 10 C -0.490 4.490 11 H 0.060 0.940 12 C 0.065 3.935 13 N -0.889 5.889 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 H 0.052 0.948 19 H 0.040 0.960 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.041 0.959 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 7.959 -3.142 8.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 C -0.193 4.193 4 C -0.191 4.191 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.248 4.248 8 C 0.028 3.972 9 H 0.092 0.908 10 C -0.528 4.528 11 H 0.078 0.922 12 C -0.137 4.137 13 N -0.527 5.527 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 H 0.071 0.929 19 H 0.059 0.941 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.835 7.776 -3.149 8.431 hybrid contribution 0.530 -0.652 0.569 1.015 sum 1.365 7.124 -2.580 7.698 Atomic orbital electron populations 1.21944 0.95632 1.01876 1.00134 1.19884 0.94398 0.93832 0.94523 1.21911 1.00834 0.96298 1.00286 1.21790 1.00746 1.00761 0.95763 1.21459 0.94819 1.03153 0.96119 1.21193 0.95607 0.98490 1.00215 1.23329 0.95384 1.10891 0.95175 1.19921 0.96555 0.84555 0.96181 0.90815 1.20708 1.00299 0.93047 1.38713 0.92180 1.25027 0.95224 0.98131 0.95359 1.69961 1.20846 1.15033 1.46815 0.86663 0.81522 0.79821 0.80022 1.20218 1.21272 1.20159 0.92864 0.94059 0.92202 0.92613 0.93956 0.93186 0.92088 0.94250 0.93113 0.93264 0.94073 0.93383 0.91341 0.91204 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.07 37.15 0.26 -2.11 16 2 C -0.03 -0.47 0.79 -154.51 -0.12 -0.59 16 3 C -0.14 -2.08 7.48 37.16 0.28 -1.81 16 4 C -0.13 -2.34 8.31 37.16 0.31 -2.03 16 5 C -0.16 -3.27 1.91 -154.52 -0.29 -3.57 16 6 C -0.10 -1.94 8.07 37.16 0.30 -1.64 16 7 C -0.21 -4.82 8.92 -26.74 -0.24 -5.06 16 8 C 0.05 1.18 4.43 -91.78 -0.41 0.77 16 9 H 0.07 2.04 6.83 -51.93 -0.35 1.69 16 10 C -0.49 -13.65 8.75 -34.44 -0.30 -13.95 16 11 H 0.06 1.64 6.60 -52.49 -0.35 1.29 16 12 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 13 N -0.89 -26.20 13.13 55.43 0.73 -25.48 16 14 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H 0.05 0.89 6.98 -51.93 -0.36 0.53 16 19 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.06 1.13 7.07 -51.93 -0.37 0.76 16 21 H 0.05 0.83 6.45 -51.93 -0.33 0.50 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 1.19 7.29 -51.93 -0.38 0.81 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.99 8.00 -51.93 -0.42 0.58 16 28 H 0.04 0.70 5.58 -51.93 -0.29 0.41 16 29 H 0.05 0.98 7.75 -51.93 -0.40 0.58 16 30 H 0.07 1.48 5.85 -51.93 -0.30 1.18 16 31 H 0.07 1.65 8.05 -51.92 -0.42 1.23 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 250.64 15.07 3.78 3.78 Total: -1.00 -28.42 250.64 -6.05 -34.47 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.22 Total: -0.98 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: -0.31 Total: -28.26 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.73 Total: -25.48 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.42 -6.05 -34.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.219 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds